nf-core / methylseqLinks
Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark/bwa-meth + MethylDackel or bwa-mem + rastair
☆187Updated 2 weeks ago
Alternatives and similar repositories for methylseq
Users that are interested in methylseq are comparing it to the libraries listed below
Sorting:
- Full-Length Alternative Isoform analysis of RNA☆246Updated this week
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆250Updated this week
- A package for including transposable elements in differential enrichment analysis of sequencing datasets.☆276Updated 3 months ago
- ATAC-seq peak-calling and QC analysis pipeline☆222Updated 2 months ago
- Fast and accurate gene fusion detection from RNA-Seq data☆259Updated 4 months ago
- Discovering known and novel miRNAs from small RNA sequencing data☆158Updated last month
- ASCAT R package☆197Updated 4 months ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆256Updated 6 months ago
- parallel fastq-dump wrapper☆303Updated 2 years ago
- Estimating tumor fraction in cell-free DNA from ultra-low-pass whole genome sequencing.☆198Updated last year
- This Snakemake pipeline implements the GATK best-practices workflow☆262Updated 2 years ago
- Precision HLA typing from next-generation sequencing data☆208Updated last year
- Miscellaneous collection of Python and R scripts for processing Iso-Seq data☆278Updated 2 years ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆232Updated 6 months ago
- A short tutorial on how to use RSEM☆138Updated 5 years ago
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆224Updated this week
- Count bases in BAM/CRAM files☆323Updated 4 years ago
- SUPPA: Fast quantification of splicing and differential splicing☆293Updated 3 months ago
- A structural variation pipeline for short-read sequencing☆201Updated this week
- A collection of scripts and notes related to genomics and bioinformatics☆219Updated 2 months ago
- Download FASTQ files from SRA or ENA repositories.☆364Updated last week
- Documentation for the ANNOVAR software☆245Updated 6 months ago
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆165Updated 2 years ago
- HiCExplorer is a powerful and easy to use set of tools to process, normalize and visualize Hi-C data.☆265Updated 6 months ago
- GATK RNA-Seq Variant Calling in Nextflow☆138Updated 3 years ago
- Script to automatically create and run IGV snapshot batchscripts☆142Updated 3 years ago
- ☆156Updated 3 years ago
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆203Updated last month
- Annotation and Ranking of Structural Variation☆286Updated 4 months ago
- Check strandedness of RNA-Seq fastq files☆128Updated 3 years ago