Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark/bwa-meth + MethylDackel or bwa-mem + rastair
☆197Jul 20, 2026Updated this week
Alternatives and similar repositories for methylseq
Users that are interested in methylseq are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A tool to map bisulfite converted sequence reads and determine cytosine methylation states☆454Updated this week
- RNA-seq analysis pipeline for detection of gene-fusions☆174Jun 22, 2026Updated 3 weeks ago
- ChIP-seq peak-calling, QC and differential analysis pipeline.☆242Updated this week
- Tools for analyzing DNA methylation data☆46May 18, 2026Updated 2 months ago
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆1,339Updated this week
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- ATAC-seq peak-calling and QC analysis pipeline☆226Jul 6, 2026Updated 2 weeks ago
- Stochastic Testing and Input Manipulation for Unbiased Learning Systems☆31Apr 30, 2026Updated 2 months ago
- R package for DNA methylation analysis☆258Updated this week
- nf-test utility functions☆12May 22, 2026Updated last month
- R package for DNA methylation analysis☆20Aug 18, 2024Updated last year
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 3 months ago
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆583Updated this week
- tools for working with Bisulfite Sequencing data while preserving reads intrinsic dependencies☆195Apr 19, 2026Updated 3 months ago
- Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-dropl…☆341Jul 13, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Please consider using/contributing to https://github.com/nf-core/sarek☆18Jan 3, 2019Updated 7 years ago
- Nascent Transcription Processing Pipeline☆23Updated this week
- 🍪 SEnsible Step-wise Analysis of DNA MEthylation BeadChips☆84Updated this week
- Analysis pipeline to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and …☆22Jun 8, 2026Updated last month
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆29Jul 6, 2026Updated 2 weeks ago
- ☆11Jun 14, 2023Updated 3 years ago
- A small-RNA sequencing analysis pipeline☆101Jul 14, 2026Updated last week
- COMETgazer mehylation analysis software suite☆10Jul 21, 2019Updated 6 years ago
- A curated collection of Nextflow implementation patterns☆373Nov 21, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A (mostly) universal methylation extractor for BS-seq experiments.☆181Jun 21, 2024Updated 2 years ago
- Analysis pipeline for the identification of viral integration events in genomes using a chimeric read approach.☆18Jun 3, 2025Updated last year
- cfDNA cell type of origin estimation☆35Oct 19, 2023Updated 2 years ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆54Jul 2, 2026Updated 2 weeks ago
- ☆14May 12, 2023Updated 3 years ago
- Call and score variants from WGS/WES of rare disease patients.☆122Updated this week
- Python package with helper tools for the nf-core community.☆317Updated this week
- Assembly and binning of metagenomes☆308Updated this week
- Nanopore demultiplexing, QC and alignment pipeline☆227Apr 30, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Config files used to define parameters specific to compute environments at different Institutions☆110Updated this week
- R package to calculate the Aneuploidy Score from Chromosome Arm-level SCNAs/Aneuploidies (CAAs) as outlined and expanded by Shukla et al.…☆16Feb 17, 2021Updated 5 years ago
- Analysis of Chromosome Conformation Capture data (Hi-C)☆110May 6, 2026Updated 2 months ago
- The set of NGS processing pipelines used at Babraham☆18Apr 17, 2026Updated 3 months ago
- Proteomics label-free quantification (LFQ) analysis pipeline☆37Jan 13, 2025Updated last year
- Documentation and description of AWS iGenomes S3 resource.☆122May 29, 2026Updated last month
- A GitHub action to install Nextflow☆31Updated this week