Workflow management with Nextflow and nf-core
☆30Jan 21, 2025Updated last year
Alternatives and similar repositories for workflows-nextflow
Users that are interested in workflows-nextflow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- From metagenomes to epitopes and beyond☆12Apr 30, 2026Updated last week
- Params validation plugin for Nextflow pipelines☆48Aug 7, 2024Updated last year
- Luslab nextflow modules☆14Apr 30, 2021Updated 5 years ago
- A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.☆17Sep 6, 2025Updated 8 months ago
- GitHub Action to launch a workflow using Nextflow Tower.☆12Mar 28, 2023Updated 3 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- Nextflow Tower CLI tool☆54Apr 29, 2026Updated last week
- ☆13Updated this week
- A proof of concept daisy-chaining Nextflow workflows☆31Mar 10, 2026Updated last month
- A snakemake pipeline for 10X genomics cellranger☆22Oct 13, 2025Updated 6 months ago
- Recommendations to contenarized your bioinformatics software☆12May 30, 2018Updated 7 years ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Jul 3, 2025Updated 10 months ago
- Web application to collect and visualise data across multiple MultiQC runs.☆94Dec 13, 2024Updated last year
- repo for OBF community newsletter updates☆19Nov 18, 2025Updated 5 months ago
- Test data to be used for automated testing with the nf-core pipelines☆160Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- pixi-to-conda-lock converts a pixi.lock file to a conda-lock.yml file☆15Jan 19, 2026Updated 3 months ago
- Nextflow pipeline wrapper for executing Cell Ranger☆13Mar 8, 2022Updated 4 years ago
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Apr 16, 2026Updated 3 weeks ago
- Trigger the Google Genomics Pipeline API with CWL☆11Feb 7, 2017Updated 9 years ago
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Feb 12, 2020Updated 6 years ago
- ☆13Mar 12, 2020Updated 6 years ago
- Self explained tutorial for molecular dynamics simulation using gromacs☆49Nov 16, 2024Updated last year
- A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries☆16Jan 27, 2020Updated 6 years ago
- A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools☆23Jun 3, 2018Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Managing Open and Reproducible Computational Projects☆12Jan 21, 2025Updated last year
- Code to accompany my blog post "Dissecting the Hype With Cheminformatics"☆12Sep 22, 2019Updated 6 years ago
- R package for generating beautiful and customizable plots for the exons and introns of any gene☆12Jul 26, 2021Updated 4 years ago
- Série de hackathons pour la reproductibilité - Une action MaDICS ReproVirtuFlow☆12Apr 20, 2020Updated 6 years ago
- An introduction to singularity☆13Dec 3, 2024Updated last year
- A fully reproducible and state-of-the-art ancient DNA analysis pipeline☆205Apr 30, 2026Updated last week
- A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted nex…☆57Apr 30, 2026Updated last week
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- R package with well defined templates for most common pipelines☆18Jul 11, 2025Updated 9 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- template datapage☆27Apr 23, 2026Updated 2 weeks ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated 2 years ago
- Precursor to SnakeChunks, see https://github.com/SnakeChunks/SnakeChunks. This project has moved and will no longer be edited here.☆11Sep 20, 2017Updated 8 years ago
- ☆13Apr 16, 2021Updated 5 years ago
- TEProf2 Pipeline used to find promoters and predict protein sequences from RNA-sequencing data☆30May 5, 2023Updated 3 years ago
- List of conferences with talk videos posted online☆12Sep 23, 2023Updated 2 years ago
- Scripts to install as a Bioconda package for making workflows☆18Sep 15, 2024Updated last year