Workflow management with Nextflow and nf-core
☆32Jan 21, 2025Updated last year
Alternatives and similar repositories for workflows-nextflow
Users that are interested in workflows-nextflow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- From metagenomes to epitopes and beyond☆12Jul 27, 2026Updated 2 weeks ago
- Luslab nextflow modules☆14Apr 30, 2021Updated 5 years ago
- DEPRECIATED! Please use nf-core/tools instead☆19Aug 8, 2018Updated 8 years ago
- Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.☆13Jul 28, 2026Updated 2 weeks ago
- Params validation plugin for Nextflow pipelines☆48Aug 7, 2024Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Nextflow Tower CLI tool☆55Updated this week
- GitHub Action to launch a workflow using Nextflow Tower.☆12Mar 28, 2023Updated 3 years ago
- ☆13Updated this week
- A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.☆17Sep 6, 2025Updated 11 months ago
- Dedicated QC-only pipeline for sequencing data. The pipeline will run a (potentially large) set of QC tools and can output global and gro…☆27Updated this week
- Command line tool for Wave containers provisioning service☆19Updated this week
- Nextflow training material☆261Updated this week
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Jul 3, 2025Updated last year
- R package for generating beautiful and customizable plots for the exons and introns of any gene☆12Jul 26, 2021Updated 5 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Recommendations to contenarized your bioinformatics software☆12May 30, 2018Updated 8 years ago
- repo for OBF community newsletter updates☆19Nov 18, 2025Updated 8 months ago
- Web application to collect and visualise data across multiple MultiQC runs.☆95Dec 13, 2024Updated last year
- Nextflow pipeline wrapper for executing Cell Ranger☆13Mar 8, 2022Updated 4 years ago
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆57Updated this week
- Trigger the Google Genomics Pipeline API with CWL☆11Feb 7, 2017Updated 9 years ago
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Updated this week
- A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries☆16Jan 27, 2020Updated 6 years ago
- ☆13Mar 12, 2020Updated 6 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Code to accompany my blog post "Dissecting the Hype With Cheminformatics"☆12Sep 22, 2019Updated 6 years ago
- A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted nex…☆63Jul 27, 2026Updated 2 weeks ago
- A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools☆24Jun 3, 2018Updated 8 years ago
- A fully reproducible and state-of-the-art ancient DNA analysis pipeline☆212Aug 7, 2026Updated last week
- Managing Open and Reproducible Computational Projects☆12Jan 21, 2025Updated last year
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- Série de hackathons pour la reproductibilité - Une action MaDICS ReproVirtuFlow☆12Apr 20, 2020Updated 6 years ago
- A collection of Python modules equivalent to R ReQTL Toolkit aims to identify the association between expressed SNVs with their gene expr…☆11Jan 20, 2022Updated 4 years ago
- Workshop materials for SFSU SCIP 2022.☆16Jun 6, 2022Updated 4 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- SQL support plugin for Nextflow☆32Updated this week
- An introduction to singularity☆13Dec 3, 2024Updated last year
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆50Aug 3, 2026Updated last week
- template datapage☆28Apr 23, 2026Updated 3 months ago
- A pipeline for assemble chroloplast genome using short/long reads☆11Mar 31, 2022Updated 4 years ago
- pipeline for read mapping, snp calling and annotation for bacterial genomes☆13Mar 12, 2024Updated 2 years ago
- Nextflow Workshop at Rocky Mountain Genomics HackCon 2018☆10Jun 19, 2018Updated 8 years ago