Workflow management with Nextflow and nf-core
☆30Jan 21, 2025Updated last year
Alternatives and similar repositories for workflows-nextflow
Users that are interested in workflows-nextflow are comparing it to the libraries listed below
Sorting:
- From metagenomes to epitopes and beyond☆12Feb 20, 2026Updated 2 weeks ago
- DEPRECIATED! Please use nf-core/tools instead☆19Aug 8, 2018Updated 7 years ago
- A snakemake pipeline for 10X genomics cellranger☆22Oct 13, 2025Updated 4 months ago
- Nextflow Tower CLI tool☆52Feb 26, 2026Updated last week
- Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.☆13Jun 3, 2025Updated 9 months ago
- Code to accompany my blog post "Dissecting the Hype With Cheminformatics"☆12Sep 22, 2019Updated 6 years ago
- Série de hackathons pour la reproductibilité - Une action MaDICS ReproVirtuFlow☆12Apr 20, 2020Updated 5 years ago
- ☆13Feb 11, 2026Updated 3 weeks ago
- Nextflow training material☆227Updated this week
- Clone of the Bioconductor repository for the TileDBArray package.☆11Jun 19, 2025Updated 8 months ago
- Recommendations to contenarized your bioinformatics software☆12May 30, 2018Updated 7 years ago
- Params validation plugin for Nextflow pipelines☆48Aug 7, 2024Updated last year
- List of IARC bioinformatics pipelines and resources☆56Nov 24, 2025Updated 3 months ago
- GitHub Action to launch a workflow using Nextflow Tower.☆12Mar 28, 2023Updated 2 years ago
- R package for generating beautiful and customizable plots for the exons and introns of any gene☆12Jul 26, 2021Updated 4 years ago
- Workflow4Metabolomics meta repository☆11May 23, 2025Updated 9 months ago
- Nextflow pipeline wrapper for executing Cell Ranger☆13Mar 8, 2022Updated 3 years ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Jul 3, 2025Updated 8 months ago
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Feb 12, 2020Updated 6 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Feb 7, 2017Updated 9 years ago
- Luslab nextflow modules☆14Apr 30, 2021Updated 4 years ago
- Learning resources originally for a class held December 2020 "Dry bench skills for Researchers". Expanding based upon mini-courses.☆11Jan 27, 2022Updated 4 years ago
- Lightweight Python interfaces for reading, writing, and querying genomic regions (BED)☆14Nov 25, 2025Updated 3 months ago
- Examples of kallisto + sleuth☆11May 18, 2017Updated 8 years ago
- A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.☆17Sep 6, 2025Updated 6 months ago
- List of conferences with talk videos posted online☆12Sep 23, 2023Updated 2 years ago
- Pipeline for the analysis of ribosome profiling, or Ribo-seq (also named ribosome footprinting) data.☆23Feb 26, 2026Updated last week
- A statically generated catalog of available Snakemake workflows☆37Updated this week
- Web application to collect and visualise data across multiple MultiQC runs.☆95Dec 13, 2024Updated last year
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆44Feb 27, 2026Updated last week
- Please consider using/contributing to https://github.com/nf-core/sarek☆18Jan 3, 2019Updated 7 years ago
- Whole Genome Sequenceing Structural Variation Pipelines☆18Apr 4, 2019Updated 6 years ago
- Data and workflow examples☆16Apr 9, 2018Updated 7 years ago
- Bioinformatics course (WSBIM1322)☆16Feb 26, 2026Updated last week
- A web based tool to manage and automate the processing of publicly available datasets.☆39Mar 16, 2021Updated 4 years ago
- Dedicated QC-only pipeline for sequencing data. The pipeline will run a (potentially large) set of QC tools and can output global and gro…☆23Updated this week
- GEO RNA-seq Experiments Processing Pipeline☆22Oct 25, 2019Updated 6 years ago
- A web-based application to perform Gene Set Enrichment Analysis (GSEA) using clusterProfiler and shiny R libraries☆16Jan 27, 2020Updated 6 years ago
- a place for GA4GH-related wiki pages☆16Aug 3, 2017Updated 8 years ago