gluonfield / nf-shardLinks
Nextflow runs monitoring and organisation UI
☆77Updated last year
Alternatives and similar repositories for nf-shard
Users that are interested in nf-shard are comparing it to the libraries listed below
Sorting:
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆45Updated this week
- This repository hosts a large collection of Nextflow snippets☆56Updated 9 months ago
- Params validation plugin for Nextflow pipelines☆48Updated last year
- Experimental features for Nextflow☆45Updated 2 months ago
- A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.☆32Updated 4 months ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆103Updated 3 months ago
- A proof of concept daisy-chaining Nextflow workflows☆26Updated 2 months ago
- seqfu - Sequece Fastx Utilities☆121Updated 3 weeks ago
- Creating alignment plots from bam files☆65Updated this week
- Simple bacterial assembly and annotation pipeline☆78Updated last week
- Web application to collect and visualise data across multiple MultiQC runs.☆95Updated 10 months ago
- ☆46Updated last week
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆63Updated last year
- SARS-CoV-2 workflow for nanopore sequence data☆42Updated 2 months ago
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆40Updated 2 years ago
- Quickly calculate and visualize sequence coverage in alignment files☆100Updated 6 years ago
- Testing building mulled containers for multi-requirement tools.☆80Updated last week
- An ultrafast optimal aligner for mapping large NGS data to large genome databases.☆57Updated last year
- Grep for FASTQ files☆98Updated 6 months ago
- ☆84Updated 2 years ago
- CRyPTIC data processing pipelines☆34Updated last year
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆22Updated last week
- ☆35Updated 2 years ago
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆88Updated 2 months ago
- Fast k-mer based tool for multi locus sequence typing (MLST)☆45Updated 5 years ago
- ☆79Updated 5 years ago
- NGSNGS: Next generation simulator for next generation sequencing data☆54Updated 11 months ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆113Updated 3 months ago
- Snakemake workflow management system and CLI generation tool☆61Updated this week
- A local-haplotagging-based small and structural variant caller☆87Updated last week