gluonfield / nf-shardLinks
Nextflow runs monitoring and organisation UI
☆74Updated 9 months ago
Alternatives and similar repositories for nf-shard
Users that are interested in nf-shard are comparing it to the libraries listed below
Sorting:
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆44Updated this week
- Params validation plugin for Nextflow pipelines☆48Updated 11 months ago
- This repository hosts a large collection of Nextflow snippets☆57Updated 5 months ago
- Experimental features for Nextflow☆43Updated 3 months ago
- vembrane filters VCF records using python expressions☆61Updated this week
- ☆42Updated 3 weeks ago
- Creating alignment plots from bam files☆65Updated this week
- A proof of concept daisy-chaining Nextflow workflows☆26Updated 2 months ago
- Nextflow workflow template repository☆17Updated 2 weeks ago
- 🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies☆107Updated this week
- A post sequencing QC tool for Oxford Nanopore sequencers☆98Updated 3 months ago
- Grep for FASTQ files☆98Updated 3 months ago
- An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.☆32Updated last week
- Testing building mulled containers for multi-requirement tools.☆76Updated this week
- expressions on VCFs☆85Updated 2 months ago
- ganon2 classifies genomic sequences against large sets of references efficiently, with integrated download and update of databases (refse…☆97Updated 3 months ago
- Dotplot large Genomes in an Interactive, Efficient and Simple way☆104Updated last week
- A VSCode extension pack for nf-core developers.☆15Updated 4 months ago
- seqfu - Sequece Fastx Utilities☆119Updated 5 months ago
- hecatomb is a virome analysis pipeline for analysis of Illumina sequence data☆58Updated last month
- A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.☆31Updated last month
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆20Updated last week
- ☆48Updated 10 months ago
- Tools to annotate genomes using long read transcriptomics data☆46Updated 4 years ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆61Updated 10 months ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆86Updated last year
- Wally: Visualization of aligned sequencing reads and contigs☆118Updated 3 months ago
- A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.☆16Updated 3 months ago
- Quickly calculate and visualize sequence coverage in alignment files☆99Updated 6 years ago