gluonfield / nf-shardLinks
Nextflow runs monitoring and organisation UI
☆77Updated last year
Alternatives and similar repositories for nf-shard
Users that are interested in nf-shard are comparing it to the libraries listed below
Sorting:
- Experimental features for Nextflow☆45Updated last month
- Params validation plugin for Nextflow pipelines☆48Updated last year
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆45Updated last week
- This repository hosts a large collection of Nextflow snippets☆57Updated 8 months ago
- A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.☆32Updated 4 months ago
- A proof of concept daisy-chaining Nextflow workflows☆26Updated last month
- seqfu - Sequece Fastx Utilities☆120Updated last week
- Web application to collect and visualise data across multiple MultiQC runs.☆95Updated 9 months ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆103Updated 2 months ago
- Grep for FASTQ files☆98Updated 5 months ago
- ☆46Updated this week
- Nextflow workflow template repository☆17Updated last week
- Tips for Nextflow and cheatsheet for channel operation☆80Updated last year
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆41Updated last month
- ☆30Updated last month
- ☆23Updated this week
- Simple test framework for Nextflow pipelines☆169Updated last week
- NGSNGS: Next generation simulator for next generation sequencing data☆54Updated 10 months ago
- Simple bacterial assembly and annotation pipeline☆78Updated 3 weeks ago
- Quickly calculate and visualize sequence coverage in alignment files☆100Updated 6 years ago
- Testing building mulled containers for multi-requirement tools.☆80Updated this week
- Creating alignment plots from bam files☆65Updated last week
- Stochastic Testing and Input Manipulation for Unbiased Learning Systems☆28Updated 2 months ago
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆21Updated last week
- SARS-CoV-2 workflow for nanopore sequence data☆41Updated 2 months ago
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆88Updated 2 months ago
- Snakemake workflow management system and CLI generation tool☆61Updated 3 months ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆63Updated last year
- An ultrafast optimal aligner for mapping large NGS data to large genome databases.☆57Updated last year
- Precise host read removal☆104Updated last month