Nextflow runs monitoring and organisation UI
☆79Sep 20, 2024Updated last year
Alternatives and similar repositories for nf-shard
Users that are interested in nf-shard are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- nf-test utility functions☆13Aug 28, 2026Updated last week
- This repository hosts a large collection of Nextflow snippets☆56Jan 26, 2025Updated last year
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆57Aug 24, 2026Updated 2 weeks ago
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 5 months ago
- A proof of concept daisy-chaining Nextflow workflows☆34Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- Params validation plugin for Nextflow pipelines☆48Aug 7, 2024Updated 2 years ago
- TAXnomic Profile Aggregation and STAndardisation☆44May 2, 2026Updated 4 months ago
- A nextflow pipeline for calling and annotating small germline variants from short DNA reads for WES and WGS data☆13Updated this week
- A nextflow pipeline for calling exome CNVs☆14Aug 17, 2026Updated 3 weeks ago
- Simple test framework for Nextflow pipelines☆190Apr 27, 2026Updated 4 months ago
- Lint Nextflow pipelines in Python.☆11Jan 23, 2025Updated last year
- Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)☆36Aug 10, 2026Updated 3 weeks ago
- A repo with just adapter sequences☆14Jul 7, 2025Updated last year
- µbinfie blog☆19Jul 21, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.☆17Sep 6, 2025Updated last year
- A collection of Groovy classes that provide utility services to nextflow pipelines.☆13Oct 25, 2022Updated 3 years ago
- nf-core/references is a bioinformatics pipeline that build references, for multiple use cases☆22Updated this week
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆24Updated this week
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆12Dec 2, 2024Updated last year
- A Nextflow workflow to generate lift over files for any pair of genomes☆76Aug 26, 2026Updated last week
- Generate random test data for bioinformatics☆27Jun 17, 2024Updated 2 years ago
- A Nextflow pipeline for running synteny analysis.☆20Aug 2, 2026Updated last month
- A VSCode extension pack for nf-core developers.☆15Mar 7, 2025Updated last year
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.☆71Updated this week
- On-demand containers provisioning service☆60Updated this week
- ☆35Feb 16, 2023Updated 3 years ago
- Nextflow DSL2 pipeline to align short and long reads to genome assembly. This workflow is part of the Tree of Life production suite.☆20Updated this week
- Experimental features for Nextflow☆53Aug 21, 2026Updated 2 weeks ago
- Access nextflow variables from python scripts or notebooks☆20Apr 11, 2021Updated 5 years ago
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆17Jul 8, 2024Updated 2 years ago
- Taxonomic Classification of Bacteria and Archaea Genomes☆19Aug 17, 2026Updated 3 weeks ago
- In-depth characterization and annotation of differences between two sets of DNA sequences☆64May 18, 2020Updated 6 years ago
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Short idioms and patterns for transforming, merging and managing files and channels in Nextflow.☆17Jul 27, 2025Updated last year
- Comprehensive pipeline for donor demultiplexing in single cell☆26Updated this week
- Config and setup to run nf-core/raredisease pipeline☆10Sep 11, 2025Updated 11 months ago
- Nextflow pipeline for generation of phylogenetic trees to be visualized in Auspice.☆11Jan 6, 2026Updated 8 months ago
- Rapid discovery of reciprocal best blast pairs.☆10Nov 9, 2024Updated last year
- Nextflow Tower system