nextflow-io / nf-co2footprint
[WIP] A Nextflow plugin to estimate the CO2 footprint of pipeline runs.
☆19Updated this week
Alternatives and similar repositories for nf-co2footprint:
Users that are interested in nf-co2footprint are comparing it to the libraries listed below
- This repository hosts a large collection of Nextflow snippets☆57Updated 3 months ago
- ☆39Updated last week
- A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.☆30Updated 3 weeks ago
- A list of awesome awesomeness related to bioinformatics and associated fields☆40Updated last month
- Params validation plugin for Nextflow pipelines☆48Updated 8 months ago
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆24Updated last week
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆18Updated 2 months ago
- A proof of concept daisy-chaining Nextflow workflows☆22Updated this week
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆36Updated 2 months ago
- genEra is a fast and easy-to-use command-line tool that estimates the age of the last common ancestor of protein-coding gene families.☆49Updated 4 months ago
- List of genome assembly tools☆65Updated 3 weeks ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆44Updated 8 months ago
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆37Updated 2 weeks ago
- Experimental features for Nextflow☆42Updated last month
- Bioinformatics tool for Locus Visualisation☆101Updated last month
- ☆69Updated last month
- Assembly methods for nanopore-based metagenomic sequencing: a comparative study☆18Updated 4 years ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆28Updated last week
- MTBseq is an automated pipeline for mapping, variant calling and detection of resistance mediating and phylogenetic variants from illumin…☆44Updated 8 months ago
- ☆61Updated last month
- A post sequencing QC tool for Oxford Nanopore sequencers☆96Updated last month
- ☆35Updated 2 years ago
- A tool for representing genomic potential and transcriptomic expression into KEGG pathways☆54Updated 8 months ago
- A local-haplotagging-based small and structural variant caller☆74Updated 2 weeks ago
- ☆31Updated 11 months ago
- SARS-CoV-2 workflow for nanopore sequence data☆40Updated 3 weeks ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆90Updated 3 years ago
- A toolkit for prokaryotic comparative genomics☆47Updated 3 months ago
- The SYNY pipeline investigates synteny between species by reconstructing protein clusters from gene pairs.☆41Updated 3 weeks ago
- A tool for generating bacterial genomes from metagenomes with nanopore long read sequencing☆70Updated 3 years ago