A collection of unexpected challenges and learnings with nextflow and nf-core.
☆42Oct 5, 2026Updated 3 weeks ago
Alternatives and similar repositories for nextflow-gotchas
Users that are interested in nextflow-gotchas are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A collection of Groovy classes that provide utility services to nextflow pipelines.☆13Oct 25, 2022Updated 4 years ago
- Nextflow wrapper built around nf-core/modules☆12Nov 25, 2024Updated last year
- nf-test utility functions☆13Sep 29, 2026Updated last month
- Access nextflow variables from python scripts or notebooks☆20Apr 11, 2021Updated 5 years ago
- Params validation plugin for Nextflow pipelines☆47Aug 7, 2024Updated 2 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Proof-of-concept Nextflow pipeline to interact with OpenAI Whisper☆11Jun 17, 2025Updated last year
- GitHub Action to launch a workflow using Nextflow Tower.☆12Mar 28, 2023Updated 3 years ago
- Simple test framework for Nextflow pipelines☆193Apr 27, 2026Updated 6 months ago
- A VSCode extension pack for nf-core developers.☆15Mar 7, 2025Updated last year
- nf-core/datasync is a system operation pipeline that provides several workflows for handling system operation / automation tasks☆11Oct 26, 2026Updated last week
- This repository hosts a large collection of Nextflow snippets☆55Jan 26, 2025Updated last year
- Command line tool for Wave containers provisioning service☆19Oct 7, 2026Updated 3 weeks ago
- A proof of concept daisy-chaining Nextflow workflows☆36Oct 13, 2026Updated 2 weeks ago
- Nextflow workflow for automatic repeat detection, classification and masking☆13Feb 19, 2018Updated 8 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- UMCU Genetics Nextflow modules☆30Oct 25, 2024Updated 2 years ago
- Luslab nextflow modules☆14Apr 30, 2021Updated 5 years ago
- A Nextflow pipeline for running synteny analysis.☆20Aug 2, 2026Updated 3 months ago
- Nextflow language support for Visual Studio Editor☆38Updated this week
- Customer workshop materials☆19May 13, 2026Updated 5 months ago
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- Stochastic Testing and Input Manipulation for Unbiased Learning Systems☆32Oct 26, 2026Updated last week
- Nextflow plugin to render provenance reports for pipeline runs. Supports standard formats such as BioCompute Object and Workflow Run RO-C…☆31Oct 13, 2026Updated 2 weeks ago
- Nextflow plugin to compare runs☆12Oct 11, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Generate beautiful API documentation for Nextflow pipelines☆19Aug 9, 2026Updated 2 months ago
- Nextflow Tower CLI tool☆55Updated this week
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Oct 5, 2026Updated 3 weeks ago
- Nextflow plugin implementation skeleton☆11Sep 1, 2025Updated last year
- SQL support plugin for Nextflow☆32Aug 10, 2026Updated 2 months ago
- Nextflow runs monitoring and organisation UI☆11Sep 9, 2026Updated last month
- Nextflow pipeline for hyperparameter optimization of machine learning models☆25May 26, 2026Updated 5 months ago
- Python package with helper tools for the nf-core community.☆329Updated this week
- Example Nextflow pipelines and programming techniques☆110May 20, 2026Updated 5 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.☆18Sep 6, 2025Updated last year
- Repository to host tool-specific module files for the Nextflow DSL2 community!☆435Updated this week
- ☆15Apr 2, 2025Updated last year
- Converts 'MultiQC' Reports into Tidy Data Frames☆19Apr 1, 2024Updated 2 years ago
- ☆11Jan 20, 2022Updated 4 years ago
- Nextflow pipeline for generation of phylogenetic trees to be visualized in Auspice.☆11Jan 6, 2026Updated 9 months ago
- Metro-map-style SVG diagrams from Mermaid graph definitions, designed for visualizing bioinformatics pipeline workflows☆71Updated this week