Midnighter / nextflow-gotchasLinks
A collection of unexpected challenges and learnings with nextflow and nf-core.
☆40Updated last year
Alternatives and similar repositories for nextflow-gotchas
Users that are interested in nextflow-gotchas are comparing it to the libraries listed below
Sorting:
- Params validation plugin for Nextflow pipelines☆48Updated last year
- Tips for Nextflow and cheatsheet for channel operation☆80Updated last year
- This repository hosts a large collection of Nextflow snippets☆56Updated 8 months ago
- A VSCode extension pack for nf-core developers.☆15Updated 7 months ago
- BigWig and BAM utilities☆97Updated last year
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Updated 11 months ago
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆45Updated 2 weeks ago
- NGSNGS: Next generation simulator for next generation sequencing data☆54Updated 10 months ago
- Demultiplexing pipeline for sequencing data☆51Updated 3 weeks ago
- A collection of modules and sub-workflows for Nextflow☆28Updated last week
- A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.☆16Updated last month
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆88Updated 11 months ago
- ☆63Updated 4 years ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆36Updated this week
- Snakemake profile for running jobs on an LSF cluster☆38Updated last year
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- sam2pairwise takes a SAM file and uses the CIGAR and MD tag to reconstruct the pairwise alignment of each read.☆44Updated 10 years ago
- Powerful statistics for VCF files☆70Updated 2 months ago
- Grep for FASTQ files☆98Updated 5 months ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated 3 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 11 months ago
- Fast FASTQ sample demultiplexing in Rust.☆65Updated 4 months ago
- Web application to collect and visualise data across multiple MultiQC runs.☆95Updated 9 months ago
- Nextflow workflow syntax highlighting and snippets for Sublime Text 4☆24Updated 9 months ago
- A read extraction and realignment tool for next generation sequencing data☆103Updated 2 years ago
- Nextflow language support for Visual Studio Editor☆35Updated last week
- A set of workflows written in Nextflow for Genome Annotation.☆45Updated last year
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆142Updated last month
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- Reference genome resource manager☆74Updated last year