Midnighter / nextflow-gotchasLinks
A collection of unexpected challenges and learnings with nextflow and nf-core.
☆41Updated 2 years ago
Alternatives and similar repositories for nextflow-gotchas
Users that are interested in nextflow-gotchas are comparing it to the libraries listed below
Sorting:
- Params validation plugin for Nextflow pipelines☆48Updated last year
- This repository hosts a large collection of Nextflow snippets☆56Updated 10 months ago
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Updated last year
- A VSCode extension pack for nf-core developers.☆15Updated 9 months ago
- Tips for Nextflow and cheatsheet for channel operation☆80Updated last year
- NGSNGS: Next generation simulator for next generation sequencing data☆54Updated last year
- BigWig and BAM utilities☆99Updated last year
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆45Updated last week
- Nextflow workflow syntax highlighting and snippets for Sublime Text 4☆24Updated 11 months ago
- A proof of concept daisy-chaining Nextflow workflows☆29Updated 3 months ago
- A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.☆16Updated 3 months ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆36Updated last week
- Fast FASTQ sample demultiplexing in Rust.☆66Updated last week
- TIDDIT - structural variant calling☆77Updated 8 months ago
- vembrane filters VCF records using python expressions☆66Updated 2 months ago
- A collection of modules and sub-workflows for Nextflow☆28Updated last month
- Web application to collect and visualise data across multiple MultiQC runs.☆95Updated 11 months ago
- A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, …☆86Updated this week
- Snakemake profile for running jobs on an LSF cluster☆38Updated last year
- ☆63Updated 5 years ago
- A template repository for snakemake workflows.☆40Updated this week
- Reference genome resource manager☆74Updated 2 years ago
- A read extraction and realignment tool for next generation sequencing data☆103Updated 3 years ago
- List of IARC bioinformatics pipelines and resources☆54Updated 2 weeks ago
- An efficient way to guess the library type of your RNA-Seq data.☆33Updated 3 years ago
- A catalogue of available long read sequencing data analysis tools☆83Updated 2 months ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆44Updated last month
- Fully automated generation of UCSC assembly hubs☆35Updated last year
- A set of workflows written in Nextflow for Genome Annotation.☆46Updated last year
- An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.☆39Updated last week