A collection of unexpected challenges and learnings with nextflow and nf-core.
☆42Oct 17, 2023Updated 2 years ago
Alternatives and similar repositories for nextflow-gotchas
Users that are interested in nextflow-gotchas are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- nf-test utility functions☆12Mar 5, 2026Updated last month
- A collection of Groovy classes that provide utility services to nextflow pipelines.☆13Oct 25, 2022Updated 3 years ago
- Access nextflow variables from python scripts or notebooks☆20Apr 11, 2021Updated 5 years ago
- Simple test framework for Nextflow pipelines☆182Mar 19, 2026Updated 3 weeks ago
- GitHub Action to launch a workflow using Nextflow Tower.☆12Mar 28, 2023Updated 3 years ago
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- A VSCode extension pack for nf-core developers.☆15Mar 7, 2025Updated last year
- This repository hosts a large collection of Nextflow snippets☆56Jan 26, 2025Updated last year
- Nextflow workflow for automatic repeat detection, classification and masking☆13Feb 19, 2018Updated 8 years ago
- Params validation plugin for Nextflow pipelines☆48Aug 7, 2024Updated last year
- Command line tool for Wave containers provisioning service☆19Updated this week
- Nextflow language support for Visual Studio Editor☆37Updated this week
- Stochastic Testing and Input Manipulation for Unbiased Learning Systems☆30Nov 20, 2025Updated 4 months ago
- A Nextflow pipeline for running synteny analysis.☆16Mar 25, 2026Updated 2 weeks ago
- ☆15Apr 2, 2025Updated last year
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- Luslab nextflow modules☆14Apr 30, 2021Updated 4 years ago
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Apr 2, 2026Updated last week
- Python package with helper tools for the nf-core community.☆298Updated this week
- A proof of concept daisy-chaining Nextflow workflows☆31Mar 10, 2026Updated last month
- Customer workshop materials☆19Apr 8, 2026Updated last week
- ☆10Jan 20, 2022Updated 4 years ago
- A post-processing tool to reclassify Kraken 2 output based on the confidence score and/or minimum minimizer hit groups.☆10Nov 10, 2025Updated 5 months ago
- A versatile, fully open-source pipeline to extract phenotypic measurements from plant images☆49May 26, 2025Updated 10 months ago
- Nextflow basic tutorial for newbie users☆33Jun 17, 2018Updated 7 years ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 2 weeks ago
- Repository to host tool-specific module files for the Nextflow DSL2 community!☆408Apr 7, 2026Updated last week
- Example Nextflow pipelines and programming techniques☆107Sep 19, 2025Updated 6 months ago
- k-mer similarity analysis pipeline☆22Nov 20, 2025Updated 4 months ago
- LaTeX disseration and thesis template for The Graduate School at Washington University in St. Louis.☆11Mar 1, 2026Updated last month
- A tutorial for DLS-2 migration☆28Sep 16, 2019Updated 6 years ago
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- An ATAC-seq pipeline wrapped in NextFlow that can be run by Jupyter☆14Jan 18, 2019Updated 7 years ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆44Apr 1, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Emacs major mode for Nextflow☆25Jan 11, 2025Updated last year
- Nextflow DSL2 pipeline to generate a Genome Note, including assembly statistics, quality metrics, and Hi-C contact maps. This workflow is…☆26Updated this week
- A flexible pipeline for complete analysis of bacterial genomes☆502Updated this week
- Blazing-Fast Bioinformatic Operations on Python DataFrames☆154Updated this week
- Structural variant benchmark☆22Mar 4, 2025Updated last year
- Nextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery☆13Apr 10, 2025Updated last year
- [MIRROR] Emacs support for Snakemake☆35Feb 4, 2025Updated last year