Midnighter / nextflow-gotchasLinks
A collection of unexpected challenges and learnings with nextflow and nf-core.
☆40Updated 2 years ago
Alternatives and similar repositories for nextflow-gotchas
Users that are interested in nextflow-gotchas are comparing it to the libraries listed below
Sorting:
- Params validation plugin for Nextflow pipelines☆48Updated last year
- This repository hosts a large collection of Nextflow snippets☆56Updated 9 months ago
- A VSCode extension pack for nf-core developers.☆15Updated 7 months ago
- Tips for Nextflow and cheatsheet for channel operation☆80Updated last year
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Updated 11 months ago
- BigWig and BAM utilities☆98Updated last year
- Grep for FASTQ files☆98Updated 6 months ago
- Fast FASTQ sample demultiplexing in Rust.☆66Updated last week
- A Snakemake workflow for calling small and structural variants under any kind of scenario (tumor/normal, tumor/normal/relapse, germline, …☆86Updated last week
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆45Updated last week
- A catalogue of available long read sequencing data analysis tools☆80Updated last month
- NGSNGS: Next generation simulator for next generation sequencing data☆54Updated 11 months ago
- A read extraction and realignment tool for next generation sequencing data☆103Updated 3 years ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆142Updated 2 months ago
- Web application to collect and visualise data across multiple MultiQC runs.☆95Updated 10 months ago
- Reference genome resource manager☆74Updated last year
- Nextflow workflow syntax highlighting and snippets for Sublime Text 4☆24Updated 9 months ago
- Demultiplexing pipeline for sequencing data☆51Updated this week
- ☆63Updated 4 years ago
- A proof of concept daisy-chaining Nextflow workflows☆26Updated 2 months ago
- A collection of modules and sub-workflows for Nextflow☆28Updated last month
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆88Updated last year
- LoFreq Star: Sensitive variant calling from sequencing data☆108Updated 2 weeks ago
- Powerful statistics for VCF files☆72Updated 3 months ago
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆88Updated 2 months ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- Quickly calculate and visualize sequence coverage in alignment files☆100Updated 6 years ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆103Updated 3 months ago
- TIDDIT - structural variant calling☆77Updated 6 months ago
- Tip and tricks for BAM files☆86Updated 7 years ago