Alternatives and similar repositories for nextflow-gotchas

Users that are interested in nextflow-gotchas are comparing it to the libraries listed below

• nextflow-io / nf-validation
  Params validation plugin for Nextflow pipelines
  ☆48Updated 11 months ago
• danrlu / nextflow_cheatsheet
  Tips for Nextflow and cheatsheet for channel operation
  ☆78Updated 11 months ago
• mribeirodantas / NextflowSnippets
  This repository hosts a large collection of Nextflow snippets
  ☆57Updated 5 months ago
• seqeralabs / wave-showcase
  Examples showing how to configure Nextflow to run with Wave containers provisioning service
  ☆21Updated 8 months ago
• nf-core / vscode-extensionpack
  A VSCode extension pack for nf-core developers.
  ☆15Updated 4 months ago
• nextflow-io / nf-schema
  Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines
  ☆44Updated last week
• fulcrumgenomics / fqgrep
  Grep for FASTQ files
  ☆98Updated 3 months ago
• nf-core / readsimulator
  A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.
  ☆31Updated last month
• snakemake-workflows / ngs-test-data
  A workflow for creating small NGS test data sets, useful for continuous integration.
  ☆22Updated 11 months ago
• ChristopherWilks / megadepth
  BigWig and BAM utilities
  ☆96Updated last year
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆63Updated last month
• bentsherman / nf-boost
  Experimental features for Nextflow
  ☆43Updated 3 months ago
• RAHenriksen / NGSNGS
  NGSNGS: Next generation simulator for next generation sequencing data
  ☆52Updated 7 months ago
• refgenie / refgenie
  Reference genome resource manager
  ☆76Updated last year
• nf-core / tower-action
  GitHub Action to launch a workflow using Nextflow Tower.
  ☆12Updated 2 years ago
• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆76Updated this week
• biocorecrg / BioNextflow
  A collection of modules and sub-workflows for Nextflow
  ☆27Updated last week
• enasequence / enaBrowserTools
  A collection of scripts to assist in the retrieval of data from the ENA Browser
  ☆86Updated last year
• fbreitwieser / bamcov
  Quickly calculate and visualize sequence coverage in alignment files
  ☆99Updated 6 years ago
• dzerbino / oases
  De novo transcriptome assembler for short reads
  ☆63Updated 7 years ago
• fulcrumgenomics / python-snakemake-template
  A template repository for Snakemake pipepline(s) and a python command-line toolkit.
  ☆28Updated 2 months ago
• brentp / tiwih
  simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.
  ☆44Updated 2 years ago
• ssadedin / bazam
  A read extraction and realignment tool for next generation sequencing data
  ☆100Updated 2 years ago
• nf-core / demultiplex
  Demultiplexing pipeline for sequencing data
  ☆47Updated this week
• smithlabcode / preseq
  Software for predicting library complexity and genome coverage in high-throughput sequencing.
  ☆87Updated 8 months ago
• NBISweden / pipelines-nextflow
  A set of workflows written in Nextflow for Genome Annotation.
  ☆45Updated last year
• nextflow-io / vscode-language-nextflow
  Nextflow language support for Visual Studio Editor
  ☆34Updated this week
• najoshi / sabre
  ☆63Updated 4 years ago
• mritchielab / long_read_tools
  A catalogue of available long read sequencing data analysis tools
  ☆78Updated 4 months ago
• nf-core / oncoanalyser
  A comprehensive cancer DNA/RNA analysis and reporting pipeline
  ☆76Updated this week