A collection of unexpected challenges and learnings with nextflow and nf-core.
☆42Oct 17, 2023Updated 2 years ago
Alternatives and similar repositories for nextflow-gotchas
Users that are interested in nextflow-gotchas are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- nf-test utility functions☆13Updated this week
- A collection of Groovy classes that provide utility services to nextflow pipelines.☆13Oct 25, 2022Updated 3 years ago
- Access nextflow variables from python scripts or notebooks☆20Apr 11, 2021Updated 5 years ago
- Simple test framework for Nextflow pipelines☆190Apr 27, 2026Updated 4 months ago
- GitHub Action to launch a workflow using Nextflow Tower.☆12Mar 28, 2023Updated 3 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- A VSCode extension pack for nf-core developers.☆15Mar 7, 2025Updated last year
- Command line tool for Wave containers provisioning service☆19Aug 12, 2026Updated 3 weeks ago
- This repository hosts a large collection of Nextflow snippets☆56Jan 26, 2025Updated last year
- Params validation plugin for Nextflow pipelines☆48Aug 7, 2024Updated 2 years ago
- Nextflow workflow for automatic repeat detection, classification and masking☆13Feb 19, 2018Updated 8 years ago
- A Nextflow pipeline for running synteny analysis.☆20Aug 2, 2026Updated last month
- Nextflow language support for Visual Studio Editor☆38Updated this week
- Luslab nextflow modules☆14Apr 30, 2021Updated 5 years ago
- Stochastic Testing and Input Manipulation for Unbiased Learning Systems☆31Jul 27, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Generate beautiful API documentation for Nextflow pipelines☆19Aug 9, 2026Updated 3 weeks ago
- Nextflow Tower CLI tool☆55Aug 27, 2026Updated last week
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Aug 10, 2026Updated 3 weeks ago
- Python package with helper tools for the nf-core community.☆319Updated this week
- A proof of concept daisy-chaining Nextflow workflows☆34Aug 24, 2026Updated last week
- ☆15Apr 2, 2025Updated last year
- Customer workshop materials☆19May 13, 2026Updated 3 months ago
- Nextflow pipeline for generation of phylogenetic trees to be visualized in Auspice.☆11Jan 6, 2026Updated 7 months ago
- ☆11Jan 20, 2022Updated 4 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Nextflow basic tutorial for newbie users☆34Jun 17, 2018Updated 8 years ago
- A versatile, fully open-source pipeline to extract phenotypic measurements from plant images☆52May 26, 2025Updated last year
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 5 months ago
- Repository to host tool-specific module files for the Nextflow DSL2 community!☆427Updated this week
- k-mer similarity analysis pipeline☆24Updated this week
- On-demand containers provisioning service☆59Updated this week
- Example Nextflow pipelines and programming techniques☆110May 20, 2026Updated 3 months ago
- A tutorial for DLS-2 migration☆28Sep 16, 2019Updated 6 years ago
- LaTeX disseration and thesis template for The Graduate School at Washington University in St. Louis.☆12Jul 1, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- ViromeScan allows the user to explore and taxonomically characterize the virome from metagenomic reads, efficiently denoising samples fro…☆13Feb 13, 2023Updated 3 years ago
- SQL support plugin for Nextflow☆32Aug 10, 2026Updated 3 weeks ago
- An ATAC-seq pipeline wrapped in NextFlow that can be run by Jupyter☆14Jan 18, 2019Updated 7 years ago
- Nextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery☆13Apr 15, 2026Updated 4 months ago
- Emacs major mode for Nextflow☆26Aug 4, 2026Updated 3 weeks ago
- A flexible pipeline for complete analysis of bacterial genomes☆523Aug 5, 2026Updated 3 weeks ago
- Workflow for MAG quality assessment and taxonomical annotation.☆15May 26, 2026Updated 3 months ago