nf-core / cookiecutterLinks
DEPRECIATED! Please use nf-core/tools instead
☆19Updated 7 years ago
Alternatives and similar repositories for cookiecutter
Users that are interested in cookiecutter are comparing it to the libraries listed below
Sorting:
- A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools☆23Updated 7 years ago
- De novo assembly of nanopore reads using nextflow☆20Updated 5 years ago
- An ultra fast and accurate paired-end adapter trimmer that needs no a priori adapter sequences.☆22Updated 4 years ago
- A collection of modules and sub-workflows for Nextflow☆27Updated this week
- conda recipes for genomic data☆85Updated 4 years ago
- create a gemini-compatible database from a VCF☆56Updated 4 years ago
- a wee tool for random access into BGZF files.☆85Updated 7 years ago
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Updated 3 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆17Updated 6 years ago
- See the main fork of this repository here >>>☆38Updated 3 months ago
- A tool to benchmark mappers and different parameters within minutes☆44Updated 6 years ago
- Error correction for Oxford Nanopore data☆47Updated 4 years ago
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Updated 5 years ago
- A tool to reduce the size of Oxford Nanopore Technologies' datasets without losing information☆31Updated last year
- Utilities to create and analyze gVCF files☆38Updated 8 years ago
- Metagenomic profiling and phylogenetic distances via common kmers☆43Updated 4 years ago
- Blast2Bam uses the XML results of Blastn, the reference and the fastQ or fasta file(s) to output a SAM file.☆49Updated 4 years ago
- Chanjo provides a better way to analyze coverage data in clinical sequencing.☆51Updated 8 months ago
- Making Snakemake workflows into full-fledged command line tools since 1999.☆52Updated 7 years ago
- ☆37Updated 5 years ago
- YAMP: Yet Another Metagenomic Pipeline☆60Updated 2 years ago
- Maximum likelihood demultiplexing☆47Updated 6 months ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago
- Various scripts and recipes for working with nanopore data☆34Updated 9 years ago
- This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion☆21Updated 4 years ago
- An awk-like VCF parser☆56Updated last year
- Simplify snpEff annotations for interesting cases☆22Updated 6 years ago
- Antibiotic resistance predictions in minutes on a laptop☆50Updated 6 years ago
- Method for detecting STR expansions from short-read sequencing data☆63Updated 3 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago