seqeralabs / seqerakitLinks
Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)
☆32Updated 2 weeks ago
Alternatives and similar repositories for seqerakit
Users that are interested in seqerakit are comparing it to the libraries listed below
Sorting:
- Nextflow plugin to render provenance reports for pipeline runs. Supports standard formats such as BioCompute Object and Workflow Run RO-C…☆30Updated last week
- Fast sequencing data quality metrics☆30Updated 2 months ago
- Access nextflow variables from python scripts or notebooks☆20Updated 4 years ago
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Updated last year
- Params validation plugin for Nextflow pipelines☆48Updated last year
- A VSCode extension pack for nf-core developers.☆15Updated 8 months ago
- Converts 'MultiQC' Reports into Tidy Data Frames☆18Updated last year
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆40Updated 2 years ago
- Nextflow Tower CLI tool☆50Updated this week
- Customer workshop materials☆18Updated 2 years ago
- Linter rules for Nextflow DSL scripts☆33Updated 2 weeks ago
- A Github action for running a Snakemake workflow☆61Updated this week
- Fast FASTQ sample demultiplexing in Rust.☆66Updated this week
- QC pipeline to inspect your sequences☆14Updated last week
- UMCU Genetics Nextflow modules☆28Updated last year
- GitHub Action to launch a workflow using Nextflow Tower.☆12Updated 2 years ago
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆45Updated 3 weeks ago
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆25Updated last month
- Experimental plugin to integrate GPT like prompt into Nextflow☆16Updated last year
- Short idioms and patterns for transforming, merging and managing files and channels in Nextflow.☆17Updated 3 months ago
- A Nextflow pipeline to identify quality control issues with new sequencing data.☆28Updated 2 years ago
- Intersect multiple VCF files with haplotype awareness☆25Updated 4 years ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Updated 4 months ago
- Nextflow language support for Visual Studio Editor☆35Updated this week
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- Snakemake workflow management system and CLI generation tool☆62Updated 3 weeks ago
- A collection of Groovy classes that provide utility services to nextflow pipelines.☆13Updated 3 years ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆19Updated 6 years ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆35Updated last year
- This repository hosts a large collection of Nextflow snippets☆56Updated 9 months ago