Alternatives and similar repositories for seqerakit

Users that are interested in seqerakit are comparing it to the libraries listed below

• Midnighter / nextflow-gotchas
  A collection of unexpected challenges and learnings with nextflow and nf-core.
  ☆37Updated last year
• nf-core / tower-action
  GitHub Action to launch a workflow using Nextflow Tower.
  ☆12Updated 2 years ago
• nf-core / vscode-extensionpack
  A VSCode extension pack for nf-core developers.
  ☆15Updated 3 months ago
• seqeralabs / wave-showcase
  Examples showing how to configure Nextflow to run with Wave containers provisioning service
  ☆21Updated 7 months ago
• nextflow-io / nf-validation
  Params validation plugin for Nextflow pipelines
  ☆48Updated 10 months ago
• multimeric / TidyMultiqc
  Converts 'MultiQC' Reports into Tidy Data Frames
  ☆19Updated last year
• seqeralabs / nf-training-advanced
  Customer workshop materials
  ☆18Updated 2 years ago
• PF2-pasteur-fr / checkMyIndex
  Search for a set of compatible indexes for your sequencing experiment
  ☆11Updated 5 years ago
• nextflow-io / nf-prov
  ☆30Updated 3 weeks ago
• telatin / covtobed
  ⛰ covtobed | Convert the coverage track from a BAM file into a BED file
  ☆44Updated 3 years ago
• nf-core / setup-nextflow
  A GitHub action to install Nextflow
  ☆18Updated this week
• Midnighter / nextflow-utility-services
  A collection of Groovy classes that provide utility services to nextflow pipelines.
  ☆13Updated 2 years ago
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆62Updated last week
• ctb / 2019-snakemake-ucdavis
  Intro to workflows for efficient automated data analysis, using snakemake.
  ☆32Updated 6 years ago
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆26Updated last week
• EnvGen / snakemake-workflows
  Common Snakemake rules and workflows mainly directed towards Metagenomic analysis.
  ☆21Updated 6 years ago
• genepi / cloudgene3
  A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.
  ☆16Updated last month
• nextflow-io / nf-hack18
  Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/
  ☆18Updated 6 years ago
• nh13 / snakeparse
  Making Snakemake workflows into full-fledged command line tools since 1999.
  ☆52Updated 7 years ago
• micans / nextflow-idioms
  Short idioms and patterns for transforming, merging and managing files and channels in Nextflow.
  ☆17Updated last year
• FredHutch / workflow-template-nextflow
  Template for building a small workflow in Nextflow
  ☆16Updated 3 years ago
• mribeirodantas / NextflowSnippets
  This repository hosts a large collection of Nextflow snippets
  ☆57Updated 4 months ago
• nextflow-io / nf-gpt
  Experimental plugin to integrate GPT like prompt into Nextflow
  ☆15Updated last year
• snakemake-workflows / ngs-test-data
  A workflow for creating small NGS test data sets, useful for continuous integration.
  ☆22Updated 9 months ago
• brentp / tiwih
  simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.
  ☆44Updated 2 years ago
• qbic-pipelines / rnadeseq
  Differential gene expression analysis and pathway analysis of RNAseq data
  ☆32Updated last week
• grst / nxfvars
  Access nextflow variables from python scripts or notebooks
  ☆21Updated 4 years ago
• bentsherman / nf-boost
  Experimental features for Nextflow
  ☆43Updated 2 months ago
• nf-core / fastquorum
  Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)
  ☆23Updated this week
• nextflow-io / vscode-language-nextflow
  Nextflow language support for Visual Studio Editor
  ☆34Updated this week