Alternatives and similar repositories for seqerakit:

Users that are interested in seqerakit are comparing it to the libraries listed below

• seqeralabs / wave-showcase
  Examples showing how to configure Nextflow to run with Wave containers provisioning service
  ☆21Updated 5 months ago
• Midnighter / nextflow-gotchas
  A collection of unexpected challenges and learnings with nextflow and nf-core.
  ☆37Updated last year
• nf-core / tower-action
  GitHub Action to launch a workflow using Nextflow Tower.
  ☆12Updated 2 years ago
• nf-core / vscode-extensionpack
  A VSCode extension pack for nf-core developers.
  ☆15Updated last month
• seqeralabs / nf-training-advanced
  Customer workshop materials
  ☆18Updated last year
• nextflow-io / nf-prov
  ☆30Updated this week
• nextflow-io / nf-validation
  Params validation plugin for Nextflow pipelines
  ☆48Updated 8 months ago
• nextflow-io / vscode-language-nextflow
  Nextflow language support for Visual Studio Editor
  ☆34Updated this week
• bentsherman / nf-boost
  Experimental features for Nextflow
  ☆42Updated last month
• Midnighter / nextflow-utility-services
  A collection of Groovy classes that provide utility services to nextflow pipelines.
  ☆13Updated 2 years ago
• nextflow-io / nf-schema
  Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines
  ☆37Updated 2 weeks ago
• micans / nextflow-idioms
  Short idioms and patterns for transforming, merging and managing files and channels in Nextflow.
  ☆16Updated last year
• grst / nxfvars
  Access nextflow variables from python scripts or notebooks
  ☆21Updated 4 years ago
• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆71Updated this week
• telatin / covtobed
  ⛰ covtobed | Convert the coverage track from a BAM file into a BED file
  ☆44Updated 3 years ago
• nextflow-io / nf-gpt
  Experimental plugin to integrate GPT like prompt into Nextflow
  ☆16Updated last year
• mribeirodantas / NextflowSnippets
  This repository hosts a large collection of Nextflow snippets
  ☆57Updated 3 months ago
• nf-core / setup-nextflow
  A GitHub action to install Nextflow
  ☆17Updated this week
• MultiQC / test-data
  Test data for MultiQC.
  ☆22Updated 2 weeks ago
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆26Updated 2 weeks ago
• multimeric / TidyMultiqc
  Converts 'MultiQC' Reports into Tidy Data Frames
  ☆18Updated last year
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆62Updated 2 weeks ago
• brentp / tiwih
  simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.
  ☆44Updated 2 years ago
• zavolanlab / zarp
  The Zavolab Automated RNA-seq Pipeline
  ☆35Updated this week
• nilesh-tawari / ChronQC
  Manuscript describing ChronQC is now available online in Bioinformatics
  ☆18Updated 5 years ago
• snakemake-workflows / dna-seq-benchmark
  A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets
  ☆12Updated last week
• noamteyssier / bedrs
  bedtools-like functionality for interval sets in rust
  ☆51Updated 8 months ago
• fulcrumgenomics / fgpyo
  Quality of life improvements for Bioinformatics in Python.
  ☆28Updated last week
• PF2-pasteur-fr / checkMyIndex
  Search for a set of compatible indexes for your sequencing experiment
  ☆11Updated 5 years ago
• genepi / cloudgene3
  A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.
  ☆16Updated 2 weeks ago