Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)
☆34Apr 16, 2026Updated 2 weeks ago
Alternatives and similar repositories for seqerakit
Users that are interested in seqerakit are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Apr 16, 2026Updated 2 weeks ago
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated last month
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆28Apr 2, 2026Updated 3 weeks ago
- Nextflow plugin implementation skeleton☆11Sep 1, 2025Updated 8 months ago
- Nextflow plugin to render provenance reports for pipeline runs. Supports standard formats such as BioCompute Object and Workflow Run RO-C…☆30Jan 5, 2026Updated 3 months ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Nextflow Tower CLI tool☆54Apr 24, 2026Updated last week
- Experimental plugin to integrate GPT like prompt into Nextflow☆17Apr 15, 2024Updated 2 years ago
- Customer workshop materials☆19Apr 16, 2026Updated 2 weeks ago
- Command line tool for Wave containers provisioning service☆19Apr 16, 2026Updated 2 weeks ago
- A GitHub action to install Nextflow☆29Updated this week
- Linter rules for Nextflow DSL scripts☆34Mar 23, 2026Updated last month
- Cookiecutter profile for making a NextFlow-based bioinformatics tool☆17Jul 8, 2024Updated last year
- nf-core/references is a bioinformatics pipeline that build references, for multiple use cases☆19Updated this week
- Nextflow runs monitoring and organisation UI☆77Sep 20, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Params validation plugin for Nextflow pipelines☆48Aug 7, 2024Updated last year
- This repository hosts a large collection of Nextflow snippets☆56Jan 26, 2025Updated last year
- A collection of Groovy classes that provide utility services to nextflow pipelines.☆13Oct 25, 2022Updated 3 years ago
- Simple test framework for Nextflow pipelines☆183Mar 19, 2026Updated last month
- Scripts and code for Kākāpō genomic data☆14Sep 4, 2023Updated 2 years ago
- Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.☆13Jun 3, 2025Updated 10 months ago
- A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)☆13Updated this week
- Nascent Transcription Processing Pipeline☆22Nov 20, 2025Updated 5 months ago
- nf-test utility functions☆12Mar 5, 2026Updated last month
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- A VSCode extension pack for nf-core developers.☆15Mar 7, 2025Updated last year
- Nextflow language support for Visual Studio Editor☆37Apr 24, 2026Updated last week
- Quality of life improvements for Bioinformatics in Python.☆32Apr 24, 2026Updated last week
- Analysis pipeline for the identification of viral integration events in genomes using a chimeric read approach.☆18Jun 3, 2025Updated 10 months ago
- Docker containers for bioinformatics with a small footprint☆23Mar 19, 2026Updated last month
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆52Apr 17, 2026Updated 2 weeks ago
- Influenza genome analysis Nextflow workflow☆25Mar 24, 2026Updated last month
- ☆30Apr 24, 2026Updated last week
- Pipeline for the analysis of ribosome profiling, or Ribo-seq (also named ribosome footprinting) data.☆25Apr 24, 2026Updated last week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆13Dec 24, 2025Updated 4 months ago
- A long read simulator based on badread idea☆23Oct 7, 2022Updated 3 years ago
- Build and maintain multiple custom conda environments all in one place.☆40Dec 3, 2024Updated last year
- A versatile, fully open-source pipeline to extract phenotypic measurements from plant images☆51May 26, 2025Updated 11 months ago
- Config files used to define parameters specific to compute environments at different Institutions☆108Updated this week
- Variant catalogue pipeline☆26Jan 30, 2026Updated 3 months ago
- Mulled - Automatized Containerized Software Repository☆67Mar 18, 2024Updated 2 years ago