seqeralabs / seqerakitLinks
Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)
☆30Updated 3 weeks ago
Alternatives and similar repositories for seqerakit
Users that are interested in seqerakit are comparing it to the libraries listed below
Sorting:
- Nextflow Tower CLI tool☆50Updated this week
- Params validation plugin for Nextflow pipelines☆48Updated last year
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆40Updated last year
- ☆30Updated 3 months ago
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Updated 9 months ago
- A VSCode extension pack for nf-core developers.☆15Updated 5 months ago
- Customer workshop materials☆18Updated 2 years ago
- Fast sequencing data quality metrics☆27Updated 2 months ago
- GitHub Action to launch a workflow using Nextflow Tower.☆12Updated 2 years ago
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆24Updated last week
- A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.☆17Updated this week
- Linter rules for Nextflow DSL scripts☆34Updated 3 weeks ago
- Nextflow language support for Visual Studio Editor☆34Updated this week
- Access nextflow variables from python scripts or notebooks☆21Updated 4 years ago
- Fast FASTQ sample demultiplexing in Rust.☆63Updated 2 months ago
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆45Updated last month
- A Github action for running a Snakemake workflow☆59Updated last month
- QC pipeline to inspect your sequences☆14Updated 2 weeks ago
- Converts 'MultiQC' Reports into Tidy Data Frames☆20Updated last year
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆44Updated this week
- Template for building a small workflow in Nextflow☆17Updated 3 years ago
- Testing building mulled containers for multi-requirement tools.☆76Updated this week
- A Nextflow pipeline to identify quality control issues with new sequencing data.☆28Updated 2 years ago
- This repository hosts a large collection of Nextflow snippets☆57Updated 6 months ago
- bedtools-like functionality for interval sets in rust☆52Updated this week
- A workflow for creating small NGS test data sets, useful for continuous integration.☆23Updated 11 months ago
- A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets☆12Updated this week
- Snakemake workflow management system and CLI generation tool☆59Updated 2 months ago
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Updated last month
- Making Snakemake workflows into full-fledged command line tools since 1999.☆52Updated 7 years ago