ypriverol / containers-rules-manuscriptLinks
Recommendations to contenarized your bioinformatics software
☆11Updated 7 years ago
Alternatives and similar repositories for containers-rules-manuscript
Users that are interested in containers-rules-manuscript are comparing it to the libraries listed below
Sorting:
- Making Snakemake workflows into full-fledged command line tools since 1999.☆51Updated 7 years ago
- Biological Graphic tool in Python☆34Updated 5 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Response to blog post about Salmon☆37Updated 8 years ago
- ☆43Updated 9 years ago
- What's The Function of these genes?☆22Updated 8 years ago
- Homebrew formulae for bioinformatics software only available for Linux☆27Updated 6 years ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆18Updated 6 years ago
- Precursor to SnakeChunks, see https://github.com/SnakeChunks/SnakeChunks. This project has moved and will no longer be edited here.☆11Updated 8 years ago
- Core functionality of the CGAT code☆33Updated last month
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- List of computational resources for analyzing microbial sequencing data.☆67Updated 3 months ago
- CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria☆28Updated 2 months ago
- GitHub Action to launch a workflow using Nextflow Tower.☆12Updated 2 years ago
- Scalable RNA-seq analysis☆73Updated 4 years ago
- Analysis from kallisto paper☆32Updated 9 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- pathoscore evaluates variant pathogenicity tools and scores.☆22Updated 3 years ago
- A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools☆23Updated 7 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- Fast fusion detection using kallisto☆79Updated 3 months ago
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 8 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- ☆25Updated 4 years ago
- This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion☆21Updated 4 years ago
- DEPRECIATED! Please use nf-core/tools instead☆19Updated 7 years ago
- Nextflow workflow for automatic repeat detection, classification and masking☆13Updated 7 years ago
- Automatic Packaging and Distribution of Bioinformatics Pipelines☆26Updated 7 years ago
- Preprocessing paired-end reads produced with experiment-specific protocols☆32Updated 7 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆34Updated 9 months ago