Alternatives and similar repositories for containers-rules-manuscript

Users that are interested in containers-rules-manuscript are comparing it to the libraries listed below

• hbc / NGS-Data-Analysis-long-course
  ☆11Updated 8 years ago
• nellore / rail
  Scalable RNA-seq analysis
  ☆73Updated 4 years ago
• nh13 / snakeparse
  Making Snakemake workflows into full-fledged command line tools since 1999.
  ☆51Updated 7 years ago
• Molmed / checkQC
  CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria
  ☆28Updated 3 months ago
• BenLangmead / qtip
  Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities
  ☆25Updated 5 years ago
• arq5x / grabix
  a wee tool for random access into BGZF files.
  ☆85Updated 7 years ago
• biocorecrg / BioNextflow
  A collection of modules and sub-workflows for Nextflow
  ☆28Updated 3 weeks ago
• tseemann / homebrew-bioinformatics-linux
  Homebrew formulae for bioinformatics software only available for Linux
  ☆27Updated 6 years ago
• evoldoers / wtfgenes
  What's The Function of these genes?
  ☆22Updated 8 years ago
• apierleoni / BioGraPy
  Biological Graphic tool in Python
  ☆34Updated 5 years ago
• nf-core / cookiecutter
  DEPRECIATED! Please use nf-core/tools instead
  ☆19Updated 7 years ago
• arq5x / ggd
  ☆43Updated 9 years ago
• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆84Updated 4 years ago
• nextflow-io / nf-hack18
  Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/
  ☆19Updated 6 years ago
• COMBINE-lab / wasabi
  Prepare Sailfish and Salmon output for downstream analysis
  ☆42Updated 6 years ago
• salmonteam / SalmonBlogResponse
  Response to blog post about Salmon
  ☆37Updated 8 years ago
• kkdey / aRchaic
  Exploration, clustering, visualization and classification of DNA damage patterns
  ☆19Updated 4 years ago
• nf-core / tower-action
  GitHub Action to launch a workflow using Nextflow Tower.
  ☆12Updated 2 years ago
• boutroslab / cld
  A software for the multispecies design of CRISPR/Cas9 libraries
  ☆36Updated 3 years ago
• pachterlab / kallisto_paper_analysis
  Analysis from kallisto paper
  ☆32Updated 9 years ago
• stevetsa / awesome-microbes
  List of computational resources for analyzing microbial sequencing data.
  ☆67Updated 4 months ago
• cancerit / cgpBigWig
  BigWig manpulation tools using libBigWig and htslib
  ☆29Updated last year
• markrobinsonuzh / CrispRVariants
  ☆25Updated 5 years ago
• shenlab-sinai / region_analysis
  A python script used to annotate genomic intervals.
  ☆18Updated 5 years ago
• sanger-pathogens / companion
  This repository has been archived, currently maintained version is at https://github.com/iii-companion/companion
  ☆21Updated 4 years ago
• biobuilds / biobuilds
  Curated collection of open-source bioinformatics tools
  ☆28Updated 6 years ago
• SamStudio8 / chitin
  chitin: an awful shell for awful bioinformaticians
  ☆61Updated 5 years ago
• biocore-ntnu / epic
  (DEPRECATED) epic: diffuse domain ChIP-Seq caller based on SICER
  ☆31Updated 6 years ago
• mjsull / HapFlow
  Visualise interstrain recombination from environmental samples.
  ☆26Updated 6 years ago
• DecodeGenetics / BamHash
  ☆36Updated 5 years ago