Alternatives and similar repositories for kmermaid:

Users that are interested in kmermaid are comparing it to the libraries listed below

• shenwei356 / easy_sbatch
  easy_sbatch - Batch submitting Slurm jobs with script templates
  ☆17Updated 3 years ago
• pantherdb / TreeGrafter
  TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.
  ☆11Updated 4 years ago
• AnWiercze / NanopoReaTA
  Nanopore Real-Time Analysis Tool
  ☆15Updated 8 months ago
• pierrepeterlongo / kmer2sequences
  Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.
  ☆21Updated last year
• aesheppard / TETyper
  transposable element typing pipeline
  ☆17Updated last year
• kocherlab / pipemake
  A pipeline creation tool using Snakemake
  ☆11Updated this week
• DaehwanKimLab / seqwho
  SeqWho - A reliable and rapid FASTQ(A) file classifier
  ☆11Updated 3 years ago
• TNTurnerLab / HAT
  HAT is a set of tools for calling de novo variants from whole-genome sequencing data.
  ☆23Updated last year
• uclahs-cds / tool-NFTest
  CLI to automate Nextflow pipeline testing
  ☆12Updated last month
• at-cg / mm2-plus
  Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)
  ☆31Updated this week
• ablab / rnaquast
  Quality assessment of de novo transcriptome assemblies from RNA-Seq data
  ☆21Updated 6 months ago
• EGTortuero / viga
  De novo VIral Genome Annotator
  ☆21Updated 7 months ago
• brentp / tnsv
  add true-negative SVs from a population callset to a truth-set.
  ☆15Updated 2 years ago
• cpockrandt / PhyloCSFpp
  PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…
  ☆31Updated 3 years ago
• abs-tudelft / variant-calling-at-scale
  Scalable and High Performance Variant Calling on Cluster Environments
  ☆10Updated 3 years ago
• bartongroup / 2passtools
  Two pass alignment for long reads
  ☆22Updated 4 years ago
• guigolab / bamstats
  A command line tool to compute mapping statistics from a BAM file
  ☆24Updated 3 years ago
• nickloman / poredb
  ☆19Updated 8 years ago
• Magdoll / CoSA
  Coronavirus (SARS-Cov-2) sequencing analysis
  ☆10Updated 3 years ago
• mikolmogorov / pbclip
  A simple tool to fix PacBio fasta/q that was not properly split into subreads
  ☆15Updated 3 years ago
• aganezov / RCK
  RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes
  ☆17Updated 5 years ago
• splicebox / PsiCLASS
  Simultaneous multi-sample transcript assembler for RNA-seq data
  ☆17Updated 4 months ago
• CMU-SAFARI / FastRemap
  FastRemap, a C++ tool for quickly remapping reads between genome assemblies based on the commonly used CrossMap tool. Link to paper: http…
  ☆26Updated 2 years ago
• luntergroup / bamsplit
  Split a BAM file by haplotype support
  ☆16Updated 7 years ago
• fulcrumgenomics / pybedlite
  Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)
  ☆14Updated 3 weeks ago
• EvolBioInf / fur
  Find Unique genomic Regions
  ☆29Updated last month
• alevar / tiebrush
  Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)
  ☆17Updated last month
• Gaius-Augustus / clamsa
  ClaMSA (Classify Multiple Sequence Alignments).
  ☆13Updated 5 months ago
• dvdylus / read2tree
  ☆20Updated 3 years ago
• maxibor / sam2lca
  Lowest Common Ancestor from a SAM/BAM/CRAM alignment file
  ☆9Updated 8 months ago