k-mer similarity analysis pipeline
☆22Nov 20, 2025Updated 4 months ago
Alternatives and similar repositories for kmermaid
Users that are interested in kmermaid are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- a toolset for efficient analysis of 10X Genomics linked read data sets, in particular for de novo assembly☆15Nov 27, 2019Updated 6 years ago
- A VSCode extension pack for nf-core developers.☆15Mar 7, 2025Updated last year
- CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.☆11Updated this week
- Dynamic programming for aa-to-nt alignment with affine gap, splicing and frameshift☆19Sep 30, 2024Updated last year
- Docker containers for bioinformatics with a small footprint☆23Mar 19, 2026Updated last week
- DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Hidden Markov Model based Copy number caller☆20Dec 9, 2025Updated 3 months ago
- Variational Auto Encoders for learning binding signatures of transcription factors☆14Mar 14, 2024Updated 2 years ago
- SaffronTree: Reference free rapid phylogenetic tree construction from raw read data☆25Jun 11, 2020Updated 5 years ago
- run-length BWT tools for genomic sequences☆19May 19, 2022Updated 3 years ago
- Population-scale detection of non-reference sequence variants using colored de Bruijn Graphs☆26Apr 29, 2024Updated last year
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 4 years ago
- Config files used to define parameters specific to compute environments at different Institutions☆108Mar 20, 2026Updated last week
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆18Mar 5, 2019Updated 7 years ago
- Pipeline for the identification of (coding) gene structures in draft genomes.☆36May 9, 2024Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- Minimizer-based assembly scaffolding and mapping using long reads☆49Mar 10, 2026Updated 2 weeks ago
- kProcessor: kmers processing framework.☆10Oct 1, 2023Updated 2 years ago
- Minimum Bait Cover Toolkit Syotti.☆13Jan 22, 2025Updated last year
- Bioinformatics tools for dealing with Multiple Alignment Format (MAF) files.☆11Jul 8, 2025Updated 8 months ago
- A streaming method for mapping nanopore raw signals☆32Nov 7, 2021Updated 4 years ago
- SYNPHONI is a tool designed for reconstructing the dynamic evolution of syntenic relationships across all scales of phylogenetic distance…☆12May 7, 2023Updated 2 years ago
- Convert structural variants to sequence graphs [ VCF + FASTA ---> GFA ]☆11Mar 6, 2024Updated 2 years ago
- MNase-seq analysis pipeline using BWA and DANPOS2.☆13Feb 23, 2026Updated last month
- nimble aligner that will map your reads to the references on a laptop☆11Jun 29, 2017Updated 8 years ago
- Simple, predictable pricing with DigitalOcean hosting • AdAlways know what you'll pay with monthly caps and flat pricing. Enterprise-grade infrastructure trusted by 600k+ customers.
- ☆12Nov 23, 2020Updated 5 years ago
- Fast approximation of similarity for sets of very different sizes☆20Mar 8, 2022Updated 4 years ago
- Variant call verification☆16May 12, 2025Updated 10 months ago
- The final version 2 release of our software to detect core genes in eukaryotic genomes☆30Mar 31, 2015Updated 10 years ago
- ☆26Aug 10, 2021Updated 4 years ago
- A lightweight, alignment-free utility for detecting repeat-containing reads in short-read WGS, WES and RNA-seq data.☆18Jan 16, 2026Updated 2 months ago
- Nextflow language support for Visual Studio Editor☆37Updated this week
- De Bruijn graph construction for large k.☆17Aug 31, 2021Updated 4 years ago
- extract MSAs from genome variation graphs☆34Mar 3, 2026Updated 3 weeks ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- De novo genome assembler.☆11Jul 30, 2018Updated 7 years ago
- 10x Genomics Reads Simulator☆46Dec 26, 2023Updated 2 years ago
- Toolkit for automated and rapid discovery of structural variants☆24Aug 24, 2023Updated 2 years ago
- PBSIM2: a simulator for long read sequencers with a novel generative model of quality scores☆74Jul 22, 2023Updated 2 years ago
- Simple bacterial assembly and annotation pipeline☆85Mar 16, 2026Updated last week
- A fast and memory-efficient k-mer counter with GPU-support☆38Oct 26, 2020Updated 5 years ago
- Ancestral flowering plant genomes reconstruction☆14Jan 23, 2023Updated 3 years ago