nf-core / kmermaid
k-mer similarity analysis pipeline
☆20Updated 3 weeks ago
Alternatives and similar repositories for kmermaid:
Users that are interested in kmermaid are comparing it to the libraries listed below
- SeqWho - A reliable and rapid FASTQ(A) file classifier☆11Updated 3 years ago
- Nanopore Real-Time Analysis Tool☆15Updated 5 months ago
- Fast long-read mapper and whole-genome aligner (accelerated version of minimap2)☆27Updated last month
- CLI to automate Nextflow pipeline testing☆12Updated 3 months ago
- ☆19Updated 7 years ago
- fastq quality assessment and filtering tool☆18Updated 2 years ago
- easy_sbatch - Batch submitting Slurm jobs with script templates☆17Updated 3 years ago
- Exhaustive capture of biological variation in RNA-seq data through k-mer decomposition.☆15Updated 6 years ago
- TreeGrafter is a new software tool for annotating uncharacterized protein sequences, using annotated phylogenetic trees.☆10Updated 4 years ago
- Two pass alignment for long reads☆21Updated 3 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- Quality assessment of de novo transcriptome assemblies from RNA-Seq data☆21Updated 3 months ago
- A command line tool to compute mapping statistics from a BAM file☆23Updated 2 years ago
- Customer workshop materials☆17Updated last year
- Simultaneous multi-sample transcript assembler for RNA-seq data☆17Updated 2 months ago
- add true-negative SVs from a population callset to a truth-set.☆15Updated 2 years ago
- Given a set of kmers (fasta format) and a set of sequences (fasta format), this tool will extract the sequences containing the kmers.☆22Updated last year
- PhyloCSF++ computes PhyloCSF tracks for whole-genome multiple sequence alignments, scores single MSA, annotates CDS features in GFF/GTF f…☆30Updated 3 years ago
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆31Updated 9 months ago
- Lightweight Python interfaces for reading, writing, and querying Genomic Regions (BED)☆14Updated 3 weeks ago
- Python bindings for the TaxonKit library☆33Updated last month
- A simple tool to fix PacBio fasta/q that was not properly split into subreads☆15Updated 3 years ago
- Find Unique genomic Regions☆29Updated last month
- Summarize and filter read alignments from multiple sequencing samples (taken as sorted BAM files)☆17Updated 4 months ago
- Accurate, Lightweight Clustering of de novo Transcriptomes using Fragment Equivalence Classes☆31Updated 8 months ago
- A pipeline creation tool using Snakemake☆11Updated this week
- Coronavirus (SARS-Cov-2) sequencing analysis☆10Updated 3 years ago
- ☆21Updated last year
- transposable element typing pipeline☆17Updated 11 months ago
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆31Updated last week