nextflow-io / nf-provLinks
☆30Updated last month
Alternatives and similar repositories for nf-prov
Users that are interested in nf-prov are comparing it to the libraries listed below
Sorting:
- Params validation plugin for Nextflow pipelines☆48Updated last year
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆40Updated last year
- Testing building mulled containers for multi-requirement tools.☆80Updated this week
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆45Updated last week
- Reference genome resource manager☆74Updated last year
- This repository hosts a large collection of Nextflow snippets☆57Updated 8 months ago
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Updated 11 months ago
- Web application to collect and visualise data across multiple MultiQC runs.☆95Updated 9 months ago
- A VSCode extension pack for nf-core developers.☆15Updated 7 months ago
- Nextflow runs monitoring and organisation UI☆77Updated last year
- A proof of concept daisy-chaining Nextflow workflows☆26Updated last month
- Nextflow language support for Visual Studio Editor☆35Updated last week
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆36Updated this week
- Experimental features for Nextflow☆45Updated last month
- Nextflow workflow syntax highlighting and snippets for Sublime Text 4☆24Updated 9 months ago
- Fast sequencing data quality metrics☆28Updated 3 weeks ago
- vembrane filters VCF records using python expressions☆64Updated last week
- Tips for Nextflow and cheatsheet for channel operation☆80Updated last year
- Fast FASTQ sample demultiplexing in Rust.☆65Updated 4 months ago
- Demultiplexing pipeline for sequencing data☆51Updated 2 weeks ago
- BigWig and BAM utilities☆97Updated last year
- Efficiently read and write sequencing data from Python☆67Updated last month
- TIDDIT - structural variant calling☆76Updated 5 months ago
- A collection of Groovy classes that provide utility services to nextflow pipelines.☆13Updated 2 years ago
- An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.☆36Updated last week
- Demonstrating best practices for bioinformatics command line tools☆116Updated 5 years ago
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆87Updated this week
- An NGS read trimming tool that is specific, sensitive, and speedy. (production)☆122Updated 5 months ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆53Updated this week
- sam2pairwise takes a SAM file and uses the CIGAR and MD tag to reconstruct the pairwise alignment of each read.☆44Updated 10 years ago