☆13Feb 11, 2026Updated last month
Alternatives and similar repositories for ncbench-workflow
Users that are interested in ncbench-workflow are comparing it to the libraries listed below
Sorting:
- A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets☆13Mar 12, 2026Updated last week
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆41Updated this week
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆52Feb 5, 2026Updated last month
- nf-core/references is a bioinformatics pipeline that build references, for multiple use cases☆19Jan 15, 2026Updated 2 months ago
- This repository hosts a large collection of Nextflow snippets☆56Jan 26, 2025Updated last year
- A nextflow pipeline for calling exome CNVs☆13Feb 24, 2026Updated 3 weeks ago
- A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.☆17Sep 6, 2025Updated 6 months ago
- nf-test utility functions☆12Mar 5, 2026Updated 2 weeks ago
- A Nextflow pipeline to play Doom☆10Dec 1, 2025Updated 3 months ago
- A VSCode extension pack for nf-core developers.☆15Mar 7, 2025Updated last year
- R package for annotating metagenomic datasets with taxonomic information☆10Feb 11, 2020Updated 6 years ago
- A Nextflow plugin to estimate the CO₂ footprint of pipeline runs.☆26Mar 6, 2026Updated 2 weeks ago
- Test data for MultiQC.☆24Mar 3, 2026Updated 2 weeks ago
- Python OncoPrint library based on Matplotlib☆25Sep 23, 2025Updated 5 months ago
- Workflow management with Nextflow and nf-core☆30Jan 21, 2025Updated last year
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆24Nov 20, 2025Updated 4 months ago
- A bioinformatics pipeline to phase and impute genetic data☆29Mar 12, 2026Updated last week
- GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…☆11Oct 11, 2022Updated 3 years ago
- Gnosis Chain Validator Deposit Tool☆12Feb 11, 2026Updated last month
- Test data to be used for automated testing with the nf-core pipelines☆153Updated this week
- Resume/CV template using RMarkdown and LaTeX☆15Mar 29, 2018Updated 7 years ago
- Converts bam or cram files to fastq format and does quality control.☆32Jan 22, 2026Updated last month
- R Shiny apps deployment made simple☆14Dec 29, 2021Updated 4 years ago
- UCSC liftOver (genome build converter) for vcf format☆12Nov 29, 2017Updated 8 years ago
- Nextflow pipeline to convert VCF files into MAF files.☆10Dec 12, 2025Updated 3 months ago
- Stochastic Testing and Input Manipulation for Unbiased Learning Systems☆30Nov 20, 2025Updated 4 months ago
- A package to run real time analysis of nanopore methylation data.☆21Jan 27, 2026Updated last month
- A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.☆33Jun 3, 2025Updated 9 months ago
- Working space for the GIAB TR benchmarking project☆24Oct 24, 2024Updated last year
- ☆24Jun 6, 2025Updated 9 months ago
- MONSDA, Modular Organizer of Nextflow and Snakemake driven hts Data Analysis☆12Feb 16, 2026Updated last month
- A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.☆40Nov 20, 2025Updated 4 months ago
- Setup webR compatible infrastructure in your Shiny package project☆20Jul 24, 2023Updated 2 years ago
- vcfdist: Accurately benchmarking phased variant calls☆84Feb 23, 2026Updated 3 weeks ago
- a novel next-generation sequencing simulator using position and genomic contexts based error profiles☆13Dec 18, 2020Updated 5 years ago
- An ensemble approach to accurately detect somatic mutations using SomaticSeq☆204Jan 5, 2026Updated 2 months ago
- A sparklyr extension for Hail☆15Jul 8, 2021Updated 4 years ago
- Operator service for StakeWise protocol☆33Mar 12, 2026Updated last week
- visualization tools for exon/junction coverage☆11Dec 30, 2019Updated 6 years ago