☆13Aug 10, 2026Updated 2 weeks ago
Alternatives and similar repositories for ncbench-workflow
Users that are interested in ncbench-workflow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets☆13Aug 17, 2026Updated last week
- nf-core/references is a bioinformatics pipeline that build references, for multiple use cases☆22Updated this week
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆57Updated this week
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 5 months ago
- This repository hosts a large collection of Nextflow snippets☆56Jan 26, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆51Aug 19, 2026Updated last week
- nf-test utility functions☆13Aug 21, 2026Updated last week
- A nextflow pipeline for calling exome CNVs☆14Aug 17, 2026Updated last week
- A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.☆17Sep 6, 2025Updated 11 months ago
- A Nextflow pipeline to play Doom☆10Dec 1, 2025Updated 8 months ago
- Command line tool for Wave containers provisioning service☆19Aug 12, 2026Updated 2 weeks ago
- A VSCode extension pack for nf-core developers.☆15Mar 7, 2025Updated last year
- R package for annotating metagenomic datasets with taxonomic information☆10Feb 11, 2020Updated 6 years ago
- Bioinformatics analysis pipeline for the functional annotation and translation of somatic SNVs/InDels and copy number abberations for pre…☆15Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Metro-map-style SVG diagrams from Mermaid graph definitions, designed for visualizing bioinformatics pipeline workflows☆42Updated this week
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆24Jul 28, 2026Updated last month
- Test data for MultiQC.☆24Updated this week
- A Nextflow plugin to estimate the CO₂ footprint of pipeline runs.☆29Aug 21, 2026Updated last week
- Python OncoPrint library based on Matplotlib☆29Sep 23, 2025Updated 11 months ago
- Workflow management with Nextflow and nf-core☆32Jan 21, 2025Updated last year
- A bioinformatics pipeline to phase and impute genetic data☆33Jul 27, 2026Updated last month
- GPRuler, an open-source computational framework to automate the reconstruction process of Gene-Protein-Reaction (GPR) rules within metabo…☆13Oct 11, 2022Updated 3 years ago
- Gnosis Chain Validator Deposit Tool☆11Apr 2, 2026Updated 4 months ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Test data to be used for automated testing with the nf-core pipelines☆164Updated this week
- Resume/CV template using RMarkdown and LaTeX☆15Mar 29, 2018Updated 8 years ago
- Converts bam or cram files to fastq format and does quality control.☆32Aug 19, 2026Updated last week
- R Shiny apps deployment made simple☆14Dec 29, 2021Updated 4 years ago
- UCSC liftOver (genome build converter) for vcf format☆12Nov 29, 2017Updated 8 years ago
- Nextflow pipeline to convert VCF files into MAF files.☆10Dec 12, 2025Updated 8 months ago
- a novel next-generation sequencing simulator using position and genomic contexts based error profiles☆13Dec 18, 2020Updated 5 years ago
- Stochastic Testing and Input Manipulation for Unbiased Learning Systems☆31Jul 27, 2026Updated last month
- A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.☆35Jul 28, 2026Updated last month
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- A sparklyr extension for Hail☆15Jul 8, 2021Updated 5 years ago
- ☆15Dec 20, 2022Updated 3 years ago
- ☆25Jun 6, 2025Updated last year
- Working space for the GIAB TR benchmarking project☆24Oct 24, 2024Updated last year
- MONSDA, Modular Organizer of Nextflow and Snakemake driven hts Data Analysis☆12Updated this week
- Nextflow pipeline to convert BAM to FASTQ, align, perform QC, assess targeted coverage, call gSNP, call sSNV, call mtSNV, call SVs, call …☆21Nov 24, 2025Updated 9 months ago
- Setup webR compatible infrastructure in your Shiny package project☆20Jul 24, 2023Updated 3 years ago