ncbench / ncbench-workflowLinks
☆13Updated 3 weeks ago
Alternatives and similar repositories for ncbench-workflow
Users that are interested in ncbench-workflow are comparing it to the libraries listed below
Sorting:
- BigWig and BAM utilities☆97Updated last year
- QDNAseq package for Bioconductor☆50Updated last year
- Params validation plugin for Nextflow pipelines☆48Updated last year
- An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.☆35Updated last week
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆106Updated 4 years ago
- Structural Variant Index☆75Updated 8 months ago
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆71Updated 11 months ago
- TIDDIT - structural variant calling☆76Updated 4 months ago
- A VSCode extension pack for nf-core developers.☆15Updated 5 months ago
- ☆44Updated 11 months ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆49Updated this week
- Mapped QC analysis program☆44Updated 7 years ago
- Web application to collect and visualise data across multiple MultiQC runs.☆96Updated 8 months ago
- The Platinum Genomes Truthset☆88Updated 7 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 6 months ago
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆73Updated 2 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 4 years ago
- Precision HLA typing from next-generation sequencing data☆71Updated last month
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆27Updated 2 months ago
- QDNAseq bin annotation for hg38☆16Updated 5 months ago
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆143Updated last week
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆63Updated 10 months ago
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆45Updated this week
- BAM Statistics, Feature Counting and Annotation☆149Updated last week
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated last year
- ☆16Updated 4 years ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆34Updated this week
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- reference implementation of GA4GH WGS Quality Control Standards☆11Updated 3 weeks ago