ncbench / ncbench-workflowLinks
☆13Updated 3 weeks ago
Alternatives and similar repositories for ncbench-workflow
Users that are interested in ncbench-workflow are comparing it to the libraries listed below
Sorting:
- Robust detection of clinically relevant structural and copy number variation from whole genome sequencing data☆73Updated last year
- A snakemake workflow for benchmarking variant calling approaches with Genome in a Bottle (GIAB), CHM (syndip) or other custom datasets☆13Updated last week
- QDNAseq package for Bioconductor☆52Updated last year
- ☆44Updated last year
- An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.☆35Updated last week
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆36Updated this week
- A VSCode extension pack for nf-core developers.☆15Updated 7 months ago
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆74Updated 4 months ago
- python plotly Circos from VCF☆40Updated last year
- BigWig and BAM utilities☆98Updated last year
- Tumor Mutational Burden☆62Updated 3 months ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆54Updated 2 weeks ago
- Structural Variant Index☆75Updated 10 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 8 months ago
- Mapped QC analysis program☆44Updated 7 years ago
- don't get DUP'ed or DEL'ed by your putative SVs.☆106Updated 4 years ago
- A snakemake pipeline for SV analysis from nanopore genome sequencing☆51Updated 5 years ago
- Set of tools to manipulate and visualize modified base bam files☆57Updated 3 years ago
- TIDDIT - structural variant calling☆77Updated 6 months ago
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆103Updated 4 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- Tool to annotate outfiles from ExpansionHunter and TRGT with the pathologic implications of the repeat☆37Updated 3 months ago
- Filtering and profiling of next-generational sequencing data using region-specific rules☆79Updated 2 years ago
- QDNAseq.hg38: QDNAseq bin annotation for hg38☆16Updated last week
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆67Updated 2 years ago
- reference implementation of GA4GH WGS Quality Control Standards☆11Updated 2 months ago
- R package designed to simplify structural variant analysis☆73Updated 3 years ago
- Human reference genome analysis sets☆55Updated 2 years ago
- ☆54Updated 2 years ago