Alternatives and similar repositories for nf-boost

Users that are interested in nf-boost are comparing it to the libraries listed below

• nextflow-io / nf-validation
  Params validation plugin for Nextflow pipelines
  ☆48Updated 9 months ago
• nf-core / bamtofastq
  Converts bam or cram files to fastq format and does quality control.
  ☆26Updated this week
• mribeirodantas / NextflowSnippets
  This repository hosts a large collection of Nextflow snippets
  ☆57Updated 3 months ago
• nextflow-io / nf-schema
  Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines
  ☆41Updated this week
• epi2me-labs / wf-basecalling
  ☆39Updated this week
• epi2me-labs / modbam2bed
  ☆46Updated 8 months ago
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆115Updated last month
• mahesh-panchal / nf-cascade
  A proof of concept daisy-chaining Nextflow workflows
  ☆24Updated last week
• genomic-medicine-sweden / nallo
  An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.
  ☆28Updated last week
• vembrane / vembrane
  vembrane filters VCF records using python expressions
  ☆58Updated 2 weeks ago
• fmalmeida / MpGAP
  Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads
  ☆59Updated 8 months ago
• refgenie / refgenie
  Reference genome resource manager
  ☆76Updated last year
• GenomiqueENS / toulligQC
  A post sequencing QC tool for Oxford Nanopore sequencers
  ☆96Updated last month
• nf-core / variantbenchmarking
  Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research
  ☆29Updated last week
• COMBINE-lab / oarfish
  long read RNA-seq quantification
  ☆83Updated last week
• ridgelab / JustOrthologs
  ☆35Updated 2 years ago
• Kuanhao-Chao / LiftOn
  🚀 LiftOn: Accurate annotation mapping for GFF/GTF across assemblies
  ☆94Updated 2 months ago
• rrazaghi / modbamtools
  Set of tools to manipulate and visualize modified base bam files
  ☆55Updated 2 years ago
• mrvollger / SmkTemplate
  A template repository for snakemake workflows.
  ☆38Updated 5 months ago
• MultiQC / MegaQC
  Web application to collect and visualise data across multiple MultiQC runs.
  ☆97Updated 5 months ago
• Midnighter / nextflow-gotchas
  A collection of unexpected challenges and learnings with nextflow and nf-core.
  ☆37Updated last year
• fulcrumgenomics / fqgrep
  Grep for FASTQ files
  ☆97Updated last month
• evotools / nf-LO
  A Nextflow workflow to generate lift over files for any pair of genomes
  ☆65Updated last month
• seqeralabs / wave-showcase
  Examples showing how to configure Nextflow to run with Wave containers provisioning service
  ☆21Updated 6 months ago
• Dfam-consortium / TETools
  Dfam Transposable Element Tools Docker container.
  ☆91Updated last week
• nickp60 / fcid
  ☆20Updated last year
• MBoemo / DNAscent
  Software for detecting regions of BrdU and EdU incorporation in Oxford Nanopore reads.
  ☆31Updated last month
• BioContainers / multi-package-containers
  Testing building mulled containers for multi-requirement tools.
  ☆72Updated this week
• cortes-ciriano-lab / savana
  Somatic structural variant caller for long-read data
  ☆63Updated 3 weeks ago
• alignoth / alignoth
  Creating alignment plots from bam files
  ☆62Updated this week