Alternatives and similar repositories for nf-boost

Users that are interested in nf-boost are comparing it to the libraries listed below

• nextflow-io / nf-validation
  Params validation plugin for Nextflow pipelines
  ☆48Updated last year
• mribeirodantas / NextflowSnippets
  This repository hosts a large collection of Nextflow snippets
  ☆57Updated 8 months ago
• genomic-medicine-sweden / nallo
  An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.
  ☆36Updated last week
• epi2me-labs / wf-basecalling
  ☆46Updated this week
• alignoth / alignoth
  Creating alignment plots from bam files
  ☆65Updated last week
• tobiasrausch / wally
  Wally: Visualization of aligned sequencing reads and contigs
  ☆118Updated 5 months ago
• COMBINE-lab / oarfish
  long read RNA-seq quantification
  ☆90Updated 2 weeks ago
• GenomiqueENS / toulligQC
  A post sequencing QC tool for Oxford Nanopore sequencers
  ☆103Updated 2 months ago
• nextflow-io / nf-schema
  Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines
  ☆45Updated last week
• mahesh-panchal / nf-cascade
  A proof of concept daisy-chaining Nextflow workflows
  ☆26Updated last month
• MultiQC / MegaQC
  Web application to collect and visualise data across multiple MultiQC runs.
  ☆95Updated 9 months ago
• CSB5 / lofreq
  LoFreq Star: Sensitive variant calling from sequencing data
  ☆107Updated 3 years ago
• epi2me-labs / modbam2bed
  ☆49Updated last week
• kcleal / dysgu
  Toolkit for calling structural variants using short or long reads
  ☆109Updated last week
• milkschen / leviosam2
  Fast and accurate coordinate conversion between assemblies
  ☆116Updated 2 weeks ago
• lh3 / minipileup
  Simple pileup-based variant caller
  ☆92Updated 5 months ago
• fulcrumgenomics / fqgrep
  Grep for FASTQ files
  ☆98Updated 5 months ago
• yangao07 / longcallD
  A local-haplotagging-based small and structural variant caller
  ☆80Updated last month
• colindaven / awesome-pangenomes
  A list of software for pangenomics
  ☆131Updated 2 weeks ago
• brentp / echtvar
  using all the bits for echt rapid variant annotation and filtering
  ☆152Updated 6 months ago
• hiruna72 / squigualiser
  Visualise and analyse nanopore (ONT) raw signals
  ☆121Updated last month
• cpockrandt / genmap
  GenMap - Fast and Exact Computation of Genome Mappability
  ☆113Updated last year
• TimD1 / vcfdist
  vcfdist: Accurately benchmarking phased variant calls
  ☆83Updated 2 weeks ago
• fritzsedlazeck / Spectre
  Copy number caller for long read data including SNV utilization
  ☆67Updated 6 months ago
• bioinfo-chru-strasbourg / vcf2circos
  python plotly Circos from VCF
  ☆39Updated last year
• cortes-ciriano-lab / savana
  Somatic structural variant caller for long-read data
  ☆80Updated last week
• lh3 / bedtk
  A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)
  ☆142Updated last month
• ogotoh / spaln
  Genome mapping and spliced alignment of cDNA or amino acid sequences
  ☆105Updated 4 months ago
• brentp / vcfexpress
  expressions on VCFs
  ☆85Updated 5 months ago
• nickp60 / fcid
  ☆23Updated last week