A versatile, fully open-source pipeline to extract phenotypic measurements from plant images
☆52May 26, 2025Updated last year
Alternatives and similar repositories for aradeepopsis
Users that are interested in aradeepopsis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A VSCode extension pack for nf-core developers.☆15Mar 7, 2025Updated last year
- Germinate is an open source plant database infrastructure and application programming platform on which complex data from genetic resourc…☆20Jul 10, 2026Updated 2 weeks ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Jul 13, 2021Updated 5 years ago
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 4 months ago
- Plant Phenotyping APP☆50Oct 15, 2024Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- In silico plant phenotyping environment☆22Mar 11, 2023Updated 3 years ago
- A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)☆13Updated this week
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆42Oct 17, 2023Updated 2 years ago
- Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)☆36May 29, 2026Updated 2 months ago
- GitHub Action to launch a workflow using Nextflow Tower.☆12Mar 28, 2023Updated 3 years ago
- An explainable Deep Machine Vision framework for Plant Stress Phenotyping☆15Jun 29, 2021Updated 5 years ago
- ☆15Apr 2, 2025Updated last year
- Command line tool for Wave containers provisioning service☆19Updated this week
- Protein 3D structure prediction pipeline☆109Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- nf-test utility functions☆12May 22, 2026Updated 2 months ago
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Apr 16, 2026Updated 3 months ago
- Yield Prediction Using Deep Learning on Multivariate Time Series Data☆18May 22, 2021Updated 5 years ago
- Workflow management system for the automated and distributed analysis of large-scale experimental data.☆13Oct 3, 2024Updated last year
- Nextflow pipeline for hyperparameter optimization of machine learning models☆25May 26, 2026Updated 2 months ago
- PhoTorch is a robust and generalized photosynthesis biochemical model fitting package based on PyTorch.☆15Sep 18, 2025Updated 10 months ago
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 9 years ago
- Nextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery☆13Apr 15, 2026Updated 3 months ago
- Nextflow Tower CLI tool☆55Updated this week
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.☆41Updated this week
- This pipeline has moved! Please see:☆11Mar 12, 2018Updated 8 years ago
- Workflow for MAG quality assessment and taxonomical annotation.☆15May 26, 2026Updated 2 months ago
- Test data for MultiQC.☆24May 12, 2026Updated 2 months ago
- Experimental plugin to integrate GPT like prompt into Nextflow☆17Apr 15, 2024Updated 2 years ago
- A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted nex…☆61Updated this week
- Params validation plugin for Nextflow pipelines☆48Aug 7, 2024Updated last year
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆20Mar 21, 2024Updated 2 years ago
- Pipeline to Extract Plant Phenotypes from Reference Data☆25Feb 24, 2025Updated last year
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark/bwa-meth + MethylDackel or bwa-mem + rastair☆197Updated this week
- TDNAscan: A Software to Identify Complete and Truncated T-DNA insertions☆22May 6, 2026Updated 2 months ago
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆33Updated this week
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Feb 12, 2020Updated 6 years ago
- Nascent Transcription Processing Pipeline☆23Updated this week
- ☆14Mar 8, 2017Updated 9 years ago
- Analysis tools for SLEAP-based plant root phenotyping.☆14Jul 7, 2026Updated 3 weeks ago