A versatile, fully open-source pipeline to extract phenotypic measurements from plant images
☆52May 26, 2025Updated last year
Alternatives and similar repositories for aradeepopsis
Users that are interested in aradeepopsis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A VSCode extension pack for nf-core developers.☆15Mar 7, 2025Updated last year
- Stochastic Testing and Input Manipulation for Unbiased Learning Systems☆31Jul 27, 2026Updated 3 weeks ago
- Germinate is an open source plant database infrastructure and application programming platform on which complex data from genetic resourc…☆20Updated this week
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Jul 13, 2021Updated 5 years ago
- Plant Phenotyping APP☆50Oct 15, 2024Updated last year
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- In silico plant phenotyping environment☆22Mar 11, 2023Updated 3 years ago
- A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)☆14Updated this week
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆42Oct 17, 2023Updated 2 years ago
- 这是一个基于AIot技术的智能育种箱,集成了温湿度、光照、浇灌、气体等一系列环境参数的监控和控制功能。☆12Mar 8, 2025Updated last year
- Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)☆36Aug 10, 2026Updated last week
- GitHub Action to launch a workflow using Nextflow Tower.☆12Mar 28, 2023Updated 3 years ago
- An explainable Deep Machine Vision framework for Plant Stress Phenotyping☆16Jun 29, 2021Updated 5 years ago
- ☆15Apr 2, 2025Updated last year
- Command line tool for Wave containers provisioning service☆19Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Protein 3D structure prediction pipeline☆111Updated this week
- nf-test utility functions☆13Updated this week
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Aug 10, 2026Updated last week
- Workflow management system for the automated and distributed analysis of large-scale experimental data.☆13Oct 3, 2024Updated last year
- Nextflow pipeline for hyperparameter optimization of machine learning models☆25May 26, 2026Updated 2 months ago
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 9 years ago
- Nextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery☆13Apr 15, 2026Updated 4 months ago
- Nextflow Tower CLI tool☆55Updated this week
- Code, data and other material supporting the series of online courses developed for the PhenoDataCampp project☆11Jan 11, 2024Updated 2 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.☆41Jul 27, 2026Updated 3 weeks ago
- This pipeline has moved! Please see:☆11Mar 12, 2018Updated 8 years ago
- We present here a 1D convolutional neural network model to predict grain protein content using spectroscopic data of multiple cereals☆15Apr 7, 2022Updated 4 years ago
- Easy Plant Phenotyping Tool for both indoor and outdoor use.☆12Jun 4, 2020Updated 6 years ago
- Workflows used for processing whole genome sequence data + germline variant calling. This Repository has been archived, please visit the …☆28Jan 4, 2021Updated 5 years ago
- Recommendations to contenarized your bioinformatics software☆12May 30, 2018Updated 8 years ago
- Workflow for MAG quality assessment and taxonomical annotation.☆15May 26, 2026Updated 2 months ago
- Test data for MultiQC.☆24May 12, 2026Updated 3 months ago
- Experimental plugin to integrate GPT like prompt into Nextflow☆17Apr 15, 2024Updated 2 years ago
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted nex…☆63Jul 27, 2026Updated 3 weeks ago
- Greenotyper is a plant phenotyping tool used for detecting multiple plants on an image and measuring size and greenness of each individua…☆18Jul 22, 2020Updated 6 years ago
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆20Mar 21, 2024Updated 2 years ago
- Pipeline to Extract Plant Phenotypes from Reference Data☆25Feb 24, 2025Updated last year
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark/bwa-meth + MethylDackel or bwa-mem + rastair☆197Updated this week
- TDNAscan: A Software to Identify Complete and Truncated T-DNA insertions☆22May 6, 2026Updated 3 months ago
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆34Aug 7, 2026Updated last week