Alternatives and similar repositories for aradeepopsis

Users that are interested in aradeepopsis are comparing it to the libraries listed below

• pachterlab / fastQpick
  ☆27Updated 11 months ago
• dputhier / pygtftk
  A python package and a set of shell commands to handle GTF files
  ☆50Updated 3 weeks ago
• manzt / pygv
  a minimal, scriptable genome browser for python
  ☆53Updated last year
• grst / containerize-conda
  Turn an existing conda environment into a Singularity container
  ☆82Updated 3 years ago
• cxli233 / customized_upset_plots
  Make customized upset plots: from raw data to plots
  ☆62Updated 4 months ago
• nf-core / variantbenchmarking
  Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research
  ☆37Updated last month
• cxli233 / ggtraces
  A tidyverse and grammar of graphics powered line traces visualizer
  ☆30Updated 4 months ago
• genepi / nf-gwas
  A nextflow pipeline to perform state-of-the-art genome-wide association studies.
  ☆76Updated 3 months ago
• genepi / cloudgene3
  A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.
  ☆16Updated 4 months ago
• jokergoo / KeywordsEnrichment
  ☆31Updated 2 years ago
• hms-dbmi / chromoscope
  Interactive multiscale visualization for structural variation in human genomes
  ☆70Updated 2 weeks ago
• RILAB / lab-docs
  The Ross-Ibarra's lab documentation
  ☆26Updated 3 years ago
• NBISweden / workshop-reproducible-research
  NBIS/Elixir course: Tools for Reproducible Research
  ☆65Updated this week
• jsh58 / DMRfinder
  Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data
  ☆28Updated 2 years ago
• seppinho / mutserve
  mtDNA Variant Caller
  ☆35Updated last year
• refresh-bio / SPLASH
  ☆84Updated 4 months ago
• wassermanlab / Variant_catalogue_pipeline
  Variant catalogue pipeline
  ☆26Updated 8 months ago
• cancerit / alleleCount
  Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…
  ☆44Updated 3 years ago
• EI-CoreBioinformatics / portcullis
  Splice junction analysis and filtering from BAM files
  ☆42Updated 3 years ago
• NCBI-Hackathons / TheHumanPangenome
  A Strategy for Building and Using a Human Reference Pangenome
  ☆71Updated 5 years ago
• Zhong-Lab-UCSD / HiCtool
  Python library for processing and visualizing Hi-C data
  ☆20Updated 5 years ago
• 123xiaochen / VCFshiny
  ☆29Updated last year
• goeckslab / isoseq-browser
  ☆13Updated 8 years ago
• adrianodemarino / Imputation_beagle_tutorial
  Imputation-beagle-tutorial
  ☆36Updated 3 years ago
• Oshlack / Clinker
  Gene Fusion Visualiser
  ☆51Updated 2 years ago
• maxplanck-ie / HiCAssembler
  Software to assemble contigs/scaffolds into chromosomes using Hi-C data
  ☆28Updated last year
• SystemsGenetics / GEMmaker
  A workflow for construction of Gene Expression count Matrices (GEMs). Useful for Differential Gene Expression (DGE) analysis and Gene Co-…
  ☆35Updated last year
• mritchielab / FLAMES
  A framework for performing single-cell and bulk read full-length analysis of mutations and splicing.
  ☆47Updated this week
• pachterlab / splitcode
  Flexible and efficient parsing, interpreting and editing of sequencing reads
  ☆45Updated last month
• AstraZeneca-NGS / simple_sv_annotation
  Simplify snpEff annotations for interesting cases
  ☆22Updated 6 years ago