A versatile, fully open-source pipeline to extract phenotypic measurements from plant images
☆52Oct 6, 2026Updated last month
Alternatives and similar repositories for aradeepopsis
Users that are interested in aradeepopsis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 这是一个基于AIot技术的智能育种箱,集成了温湿度、光照、浇灌、气体等一系列环境参数的监控和控制功能。☆12Mar 8, 2025Updated last year
- A VSCode extension pack for nf-core developers.☆15Mar 7, 2025Updated last year
- nf-core/datasync is a system operation pipeline that provides several workflows for handling system operation / automation tasks☆11Oct 26, 2026Updated last week
- Germinate is an open source plant database infrastructure and application programming platform on which complex data from genetic resourc…☆22Updated this week
- Stochastic Testing and Input Manipulation for Unbiased Learning Systems☆32Oct 26, 2026Updated last week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Jul 13, 2021Updated 5 years ago
- Params validation plugin for Nextflow pipelines☆47Aug 7, 2024Updated 2 years ago
- Proof-of-concept Nextflow pipeline to interact with OpenAI Whisper☆11Jun 17, 2025Updated last year
- Plant Phenotyping APP☆52Oct 15, 2024Updated 2 years ago
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 7 months ago
- GitHub Action to launch a workflow using Nextflow Tower.☆12Mar 28, 2023Updated 3 years ago
- ☆15Apr 2, 2025Updated last year
- ☆10Updated this week
- In silico plant phenotyping environment☆22Mar 11, 2023Updated 3 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Command line tool for Wave containers provisioning service☆19Oct 7, 2026Updated last month
- DMR Identification Tool☆35Jul 6, 2023Updated 3 years ago
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆42Oct 5, 2026Updated last month
- Protein 3D structure prediction pipeline☆116Oct 27, 2026Updated last week
- An explainable Deep Machine Vision framework for Plant Stress Phenotyping☆17Jun 29, 2021Updated 5 years ago
- Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)☆36Oct 5, 2026Updated last month
- nf-test utility functions☆13Sep 29, 2026Updated last month
- Workflow management system for the automated and distributed analysis of large-scale experimental data.☆13Oct 3, 2024Updated 2 years ago
- A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)☆14Updated this week
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- iDEP: integrated Differential Expression & Pathway analysis☆14Mar 1, 2019Updated 7 years ago
- GEM software suite (GEM, GPS, KMAC, KSM, RMD, etc.)☆10Aug 14, 2018Updated 8 years ago
- PhoTorch is a robust and generalized photosynthesis biochemical model fitting package based on PyTorch.☆16Sep 18, 2025Updated last year
- Target exome sequencing analysis for NYU NGS580 gene panel☆10Sep 29, 2021Updated 5 years ago
- ☆10Updated this week
- This group is a platform imagined as an interactive “ metabolic network ”, where the nodes represent the different areas of plant phenomi…☆13Dec 15, 2021Updated 4 years ago
- Perform GWAS with gemma in a simple pipeline☆28Apr 26, 2025Updated last year
- The code behind the Sol Genomics Network, Cassavabase and other Breedbase websites☆78Updated this week
- A Nextflow implementation of the Tuxedo Suite of Tools: HISAT, StringTie & Ballgown☆10Apr 2, 2018Updated 8 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 9 years ago
- Nextflow pipeline for hyperparameter optimization of machine learning models☆25Updated this week
- Yield Prediction Using Deep Learning on Multivariate Time Series Data☆19May 22, 2021Updated 5 years ago
- Nextflow Tower CLI tool☆55Updated this week
- A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.☆41Updated this week
- Workflows used for processing whole genome sequence data + germline variant calling. This Repository has been archived, please visit the …☆28Jan 4, 2021Updated 5 years ago
- Nextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery☆13Updated this week