A versatile, fully open-source pipeline to extract phenotypic measurements from plant images
☆52May 26, 2025Updated last year
Alternatives and similar repositories for aradeepopsis
Users that are interested in aradeepopsis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A VSCode extension pack for nf-core developers.☆15Mar 7, 2025Updated last year
- Stochastic Testing and Input Manipulation for Unbiased Learning Systems☆31Apr 30, 2026Updated last month
- ☆15Apr 2, 2025Updated last year
- Germinate is an open source plant database infrastructure and application programming platform on which complex data from genetic resourc…☆19Jun 11, 2026Updated last week
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 2 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- GitHub Action to launch a workflow using Nextflow Tower.☆12Mar 28, 2023Updated 3 years ago
- An explainable Deep Machine Vision framework for Plant Stress Phenotyping☆15Jun 29, 2021Updated 4 years ago
- Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)☆36May 29, 2026Updated 3 weeks ago
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Apr 16, 2026Updated 2 months ago
- A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)☆13Apr 30, 2026Updated last month
- nf-test utility functions☆12May 22, 2026Updated 3 weeks ago
- Yield Prediction Using Deep Learning on Multivariate Time Series Data☆18May 22, 2021Updated 5 years ago
- Workflow management system for the automated and distributed analysis of large-scale experimental data.☆13Oct 3, 2024Updated last year
- Nextflow pipeline for hyperparameter optimization of machine learning models☆25May 26, 2026Updated 3 weeks ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- TDNAscan: A Software to Identify Complete and Truncated T-DNA insertions☆21May 6, 2026Updated last month
- We present here a 1D convolutional neural network model to predict grain protein content using spectroscopic data of multiple cereals☆15Apr 7, 2022Updated 4 years ago
- Protein 3D structure prediction pipeline☆108Updated this week
- Gene Prediction using MAKER, CEGMA, SNAP, GENEMARK & AUGUSTUS☆10Jul 20, 2017Updated 8 years ago
- This pipeline has moved! Please see:☆11Mar 12, 2018Updated 8 years ago
- Workflows used for processing whole genome sequence data + germline variant calling. This Repository has been archived, please visit the …☆28Jan 4, 2021Updated 5 years ago
- Easy Plant Phenotyping Tool for both indoor and outdoor use.☆12Jun 4, 2020Updated 6 years ago
- Params validation plugin for Nextflow pipelines☆48Aug 7, 2024Updated last year
- Test data for MultiQC.☆24May 12, 2026Updated last month
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Nextflow pipeline encapsulating workflows for analyzing expansion lattice light-sheet microscopy (ExLLSM) imagery☆13Apr 15, 2026Updated 2 months ago
- Experimental plugin to integrate GPT like prompt into Nextflow☆17Apr 15, 2024Updated 2 years ago
- MITE Tracker: An accurate approach to identify miniature inverted-repeat transposable elements in large genomes☆20Mar 21, 2024Updated 2 years ago
- A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted nex…☆61Apr 30, 2026Updated last month
- Command line tool for Wave containers provisioning service☆19May 13, 2026Updated last month
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark/bwa-meth + MethylDackel or bwa-mem + rastair☆192Jun 3, 2026Updated 2 weeks ago
- Pipeline to Extract Plant Phenotypes from Reference Data☆25Feb 24, 2025Updated last year
- KnetMiner - webapp to search and visualize genome-scale knowledge graphs☆30Jun 10, 2026Updated last week
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Feb 12, 2020Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆33Apr 30, 2026Updated last month
- Nascent Transcription Processing Pipeline☆23Apr 30, 2026Updated last month
- A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools☆24Jun 3, 2018Updated 8 years ago
- Série de hackathons pour la reproductibilité - Une action MaDICS ReproVirtuFlow☆12Apr 20, 2020Updated 6 years ago
- Bax File Decoder and Data Compressor☆33Jan 3, 2024Updated 2 years ago
- Nextflow plugin implementation skeleton☆11Sep 1, 2025Updated 9 months ago
- Simple bacterial assembly and annotation pipeline☆88Jun 11, 2026Updated last week