Alternatives and similar repositories for cloudgene3

Users that are interested in cloudgene3 are comparing it to the libraries listed below

• nf-core / variantbenchmarking
  Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research
  ☆36Updated this week
• mribeirodantas / NextflowSnippets
  This repository hosts a large collection of Nextflow snippets
  ☆56Updated 8 months ago
• nextflow-io / nf-validation
  Params validation plugin for Nextflow pipelines
  ☆48Updated last year
• adnaniazi / tailfindr
  An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.
  ☆54Updated 11 months ago
• zavolanlab / zarp
  The Zavolab Automated RNA-seq Pipeline
  ☆35Updated 2 months ago
• RAHenriksen / NGSNGS
  NGSNGS: Next generation simulator for next generation sequencing data
  ☆54Updated 10 months ago
• pachterlab / splitcode
  Flexible and efficient parsing, interpreting and editing of sequencing reads
  ☆44Updated 3 months ago
• vembrane / vembrane
  vembrane filters VCF records using python expressions
  ☆64Updated last week
• citiususc / BigSeqKit
  BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale
  ☆56Updated 2 years ago
• Midnighter / nextflow-gotchas
  A collection of unexpected challenges and learnings with nextflow and nf-core.
  ☆40Updated last year
• nf-core / rnavar
  gatk4 RNA variant calling pipeline
  ☆54Updated 2 weeks ago
• telatin / bamtocov
  🏔 coverage extraction from BAM/CRAM files, supporting targets 📊  
  ☆64Updated 3 months ago
• mritchielab / long_read_tools
  A catalogue of available long read sequencing data analysis tools
  ☆79Updated 2 weeks ago
• jsh58 / NGmerge
  Merging paired-end reads and removing adapters
  ☆46Updated last week
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆65Updated 4 months ago
• ChristopherWilks / megadepth
  BigWig and BAM utilities
  ☆97Updated last year
• nf-core / vscode-extensionpack
  A VSCode extension pack for nf-core developers.
  ☆15Updated 7 months ago
• rhpvorderman / sequali
  Fast sequencing data quality metrics
  ☆28Updated 3 weeks ago
• bioinfo-chru-strasbourg / vcf2circos
  python plotly Circos from VCF
  ☆39Updated last year
• jonas-fuchs / BAMdash
  create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks
  ☆54Updated last month
• mortazavilab / swan_vis
  A Python library to visualize and analyze long-read transcriptomes
  ☆63Updated 5 months ago
• EI-CoreBioinformatics / portcullis
  Splice junction analysis and filtering from BAM files
  ☆42Updated 3 years ago
• IARCbioinfo / BAM-tricks
  Tip and tricks for BAM files
  ☆86Updated 7 years ago
• ridgelab / JustOrthologs
  ☆35Updated 2 years ago
• brentp / vcfexpress
  expressions on VCFs
  ☆85Updated 5 months ago
• pwwang / vcfstats
  Powerful statistics for VCF files
  ☆70Updated 2 months ago
• a-slide / NanoCount
  EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2
  ☆63Updated 11 months ago
• ulelab / ultraplex
  Ultra-fast 5' and 3' demultiplexer
  ☆28Updated last year
• danrlu / nextflow_cheatsheet
  Tips for Nextflow and cheatsheet for channel operation
  ☆80Updated last year
• lh3 / ref-gen
  Human reference genome analysis sets
  ☆55Updated 2 years ago