genepi / cloudgene3Links
A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.
☆16Updated last week
Alternatives and similar repositories for cloudgene3
Users that are interested in cloudgene3 are comparing it to the libraries listed below
Sorting:
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆36Updated this week
- This repository hosts a large collection of Nextflow snippets☆57Updated 7 months ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆44Updated 3 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 11 months ago
- 🏔 coverage extraction from BAM/CRAM files, supporting targets 📊☆64Updated 2 months ago
- An efficient CLI to extract sequences from the SRA☆112Updated last month
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆54Updated last month
- BigSeqKit: a parallel Big Data toolkit to process FASTA and FASTQ files at scale☆56Updated 2 years ago
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆63Updated 11 months ago
- A proof of concept daisy-chaining Nextflow workflows☆26Updated 3 weeks ago
- The Zavolab Automated RNA-seq Pipeline☆35Updated last month
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆48Updated 2 weeks ago
- Params validation plugin for Nextflow pipelines☆48Updated last year
- Merging paired-end reads and removing adapters☆46Updated 6 months ago
- Fast FASTQ sample demultiplexing in Rust.☆64Updated 3 months ago
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆57Updated 3 months ago
- visual analysis of your VCF files☆36Updated 2 years ago
- gatk4 RNA variant calling pipeline☆53Updated 2 weeks ago
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆86Updated last week
- NGSNGS: Next generation simulator for next generation sequencing data☆54Updated 9 months ago
- A python package and a set of shell commands to handle GTF files☆49Updated last year
- Powerful statistics for VCF files☆70Updated 2 months ago
- BigWig and BAM utilities☆97Updated last year
- ☆27Updated 7 months ago
- A catalogue of available long read sequencing data analysis tools☆78Updated this week
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆74Updated 5 months ago
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 4 months ago
- POSTRE: Prediction Of STRuctural variant Effects☆28Updated 6 months ago
- course about NGS data processing: genomics and transcriptomics☆33Updated 4 years ago