SciLifeLab / NGI-RNAseqLinks
Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.
☆51Updated 6 years ago
Alternatives and similar repositories for NGI-RNAseq
Users that are interested in NGI-RNAseq are comparing it to the libraries listed below
Sorting:
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- Relevant papers for CNV and SV approaches☆94Updated 9 months ago
- How to use CENTIPEDE to determine if a transcription factor is bound.☆26Updated 7 years ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆116Updated 6 months ago
- Tool for parsing outputs from fusion detection tools. Part of a nf-core/rnafusion pipeline. Checkout a live demo at https://matq007.githu…☆27Updated last month
- ☆78Updated 11 years ago
- ☆82Updated 3 years ago
- ☆50Updated 4 years ago
- A tool for bigWig files.☆119Updated 7 years ago
- An interactive web-tool for RNA-seq analysis☆68Updated 5 months ago
- Snakemake based pipeline for RNA-Seq analysis☆31Updated 6 years ago
- Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).☆93Updated 8 years ago
- BigWig and BAM utilities☆97Updated last year
- Exome/Capture/RNASeq Pipeline Implementation using snakemake☆47Updated 7 years ago
- csf fork of fastqc for usage on selected reads of unaligned bam file☆48Updated 12 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆66Updated 2 weeks ago
- Precision HLA typing from next-generation sequencing data☆70Updated last week
- List of IARC bioinformatics pipelines and resources☆51Updated 3 weeks ago
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆88Updated 9 months ago
- Galaxy RNA workbench☆40Updated 4 years ago
- ☆70Updated 2 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆40Updated 7 years ago
- Documentation and description of AWS iGenomes S3 resource.☆114Updated 8 months ago
- R package for bcbio RNA-seq analysis.☆62Updated 11 months ago
- Analysis of subclonal copy number alterations (CNA) and loss of heterozygosity (LOH) in cancer☆97Updated 4 years ago
- SPP - R package for analysis of ChIP-seq and other functional sequencing data☆43Updated 4 years ago
- create, manage, and upload track hubs for use in the UCSC genome browser☆54Updated last year