nextflow-io / cwl2nxf
Import a CWL workflow specification to Nextflow script (experimental)
☆27Updated 6 years ago
Alternatives and similar repositories for cwl2nxf:
Users that are interested in cwl2nxf are comparing it to the libraries listed below
- Import and run CWL workflows on DNAnexus (alpha)☆13Updated 6 years ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Updated 3 years ago
- Convert CWL to WDL☆17Updated 8 years ago
- Docker images of bioinformatics software☆21Updated 7 years ago
- Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/☆18Updated 5 years ago
- ☆13Updated 7 years ago
- Automated CWL and Galaxy XML generation for Python tools that use argparse and click☆11Updated 5 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Accumulating container resource usage with workflow metadata☆19Updated 3 years ago
- prioritize effects of variant annotations from VEP, SnpEff, et al.☆33Updated 3 months ago
- Trigger the Google Genomics Pipeline API with CWL☆11Updated 8 years ago
- The gkno launcher for executing tools or pipelines☆32Updated 8 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 7 months ago
- H3ABioNet 16S rDNA diverstity analysis package☆18Updated 5 years ago
- Analysis Framework for Biological Data from High Throughput Experiments☆34Updated 8 years ago
- Precursor to SnakeChunks, see https://github.com/SnakeChunks/SnakeChunks. This project has moved and will no longer be edited here.☆11Updated 7 years ago
- CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria☆27Updated last week
- Curated collection of open-source bioinformatics tools☆28Updated 6 years ago
- Toolbox for generic NGS analyses - A framework to quickly build pipelines and to perform large-scale NGS analysis☆18Updated 2 years ago
- reference free variant assembly☆33Updated last year
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated last year
- What's The Function of these genes?☆22Updated 7 years ago
- extract SV signal from a BAM☆11Updated 6 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- The snakemake interface, currently works like a notebook (under development)☆18Updated 3 years ago
- A data processing platform for ChIP-seq, RNA-seq, MNase-seq, DNase-seq, ATAC-seq and GRO-seq datasets. Please ignore information on ciphe…☆19Updated 7 years ago
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Updated 5 years ago
- Reads the output from CLI help commands, and generates machine readable schemas (CWL etc)☆14Updated 4 years ago
- Simplify snpEff annotations for interesting cases☆21Updated 6 years ago
- Using reference-free compressed data structures to analyse thousands of human genomes (1000 Genomes ReadServer)☆14Updated 7 years ago