Alternatives and similar repositories for cwl2nxf

Users that are interested in cwl2nxf are comparing it to the libraries listed below

• dnanexus-archive / dx-cwl
  Import and run CWL workflows on DNAnexus (alpha)
  ☆13Updated 7 years ago
• common-workflow-lab / wdl2cwl
  [Experimental] Workflow Definition Language (WDL) to CWL
  ☆28Updated 4 years ago
• PMCC-BioinformaticsCore / janis
  [Alpha] Janis: an open source tool to machine generate type-safe CWL and WDL workflows
  ☆44Updated 2 years ago
• adamstruck / cwl2wdl
  Convert CWL to WDL
  ☆17Updated 9 years ago
• bioboxes / rfc
  Request for comments on interchangeable bioinformatics containers
  ☆39Updated 6 years ago
• yvdriess / precipes
  Parallel Recipes : parallel workflow execution made easy
  ☆13Updated 10 years ago
• nextflow-io / nf-hack18
  Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/
  ☆19Updated 6 years ago
• iqbal-lab / cortex
  reference free variant assembly
  ☆34Updated 2 years ago
• Molmed / checkQC
  CheckQC inspects the content of an Illumina runfolder and determines if it passes a set of quality criteria
  ☆29Updated last month
• biobuilds / biobuilds
  Curated collection of open-source bioinformatics tools
  ☆28Updated 6 years ago
• NCI-GDC / gdc-dnaseq-cwl
  CWL for GDC DNASeq workflows
  ☆23Updated this week
• common-workflow-lab / gxargparse
  Automated CWL and Galaxy XML generation for Python tools that use argparse and click
  ☆11Updated 6 years ago
• BD2KGenomics / toil-scripts
  Toil workflows for common genomic pipelines
  ☆33Updated 6 years ago
• h3abionet / h3abionet16S
  H3ABioNet 16S rDNA diverstity analysis package
  ☆19Updated 6 years ago
• SamStudio8 / majora2
  Malleable All-seeing Journal Of Research Artifacts
  ☆35Updated 2 years ago
• enasequence / cramtools
  CRAM format specification and java API for read data.
  ☆59Updated 7 years ago
• AstraZeneca-NGS / simple_sv_annotation
  Simplify snpEff annotations for interesting cases
  ☆22Updated 6 years ago
• brentp / geneimpacts
  prioritize effects of variant annotations from VEP, SnpEff, et al.
  ☆34Updated last year
• nilesh-tawari / ChronQC
  Manuscript describing ChronQC is now available online in Bioinformatics
  ☆18Updated 6 years ago
• gogetdata / ggd-recipes
  conda recipes for genomic data
  ☆84Updated 4 years ago
• cancerit / cgpBigWig
  BigWig manpulation tools using libBigWig and htslib
  ☆30Updated last year
• Clinical-Genomics / chanjo
  Chanjo provides a better way to analyze coverage data in clinical sequencing.
  ☆50Updated 3 weeks ago
• karel-brinda / smbl
  SMBL - SnakeMake Bioinformatics Library. Automatic installation of bioinformatics software in your SnakeMake pipelines.
  ☆23Updated 8 years ago
• sjackman / docker-bio
  Docker images of bioinformatics software
  ☆21Updated 8 years ago
• bow / crimson
  Bioinformatics tool outputs converter to JSON or YAML
  ☆35Updated 6 months ago
• IARCbioinfo / alignment-nf
  Whole Exome/Whole Genome Sequencing alignment pipeline
  ☆28Updated last year
• vpc-ccg / calib
  Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.
  ☆39Updated 2 years ago
• NCBI-Hackathons / ATACFlow
  An ATAC-seq pipeline wrapped in NextFlow that can be run by Jupyter
  ☆14Updated 6 years ago
• bihealth / hlama
  Simple matching of HTS samples based on HLA typing
  ☆13Updated 8 years ago
• percyfal / snakemakelib
  Snakemake library for bioinformatics programs, with a focus on next-generation sequencing
  ☆22Updated 9 years ago