Import a CWL workflow specification to Nextflow script (experimental)
☆27Aug 9, 2018Updated 7 years ago
Alternatives and similar repositories for cwl2nxf
Users that are interested in cwl2nxf are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Import and run CWL workflows on DNAnexus (alpha)☆13Sep 12, 2018Updated 7 years ago
- Trigger the Google Genomics Pipeline API with CWL☆11Feb 7, 2017Updated 9 years ago
- Assembly and intrahost / low-frequency variant calling for viral samples☆15Feb 12, 2020Updated 6 years ago
- Implementation of the GA4GH Workflow Execution Service, a REST service for running workflows☆39Apr 13, 2026Updated 3 months ago
- Parallel Recipes : parallel workflow execution made easy☆13Sep 1, 2015Updated 10 years ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Convert CWL to WDL☆17Oct 17, 2016Updated 9 years ago
- H3ABioNet 16S rDNA diverstity analysis package☆19May 20, 2019Updated 7 years ago
- Java SDK for the Common Workflow Language standards☆16Updated this week
- robust matching of small variant datasets using flexible scoring schemes☆12Mar 26, 2020Updated 6 years ago
- Genomics database manager☆25Mar 3, 2014Updated 12 years ago
- cwl-tes submits your tasks to a TES server. Task submission is parallelized when possible.☆19Mar 2, 2023Updated 3 years ago
- A collection of modules and sub-workflows for Nextflow☆29Feb 13, 2026Updated 5 months ago
- [Experimental] Workflow Definition Language (WDL) to CWL☆28Nov 17, 2021Updated 4 years ago
- Website about the project WorkflowHub☆13Jul 16, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Common Workflow Language reference implementation☆373Updated this week
- Heterogeneity-incorporating Workflow ApplicationMaster for YARN☆26Oct 31, 2017Updated 8 years ago
- Patterns commonly encountered when writing CWL workflows☆26Mar 30, 2022Updated 4 years ago
- A language server for Common Workflow Language☆64Dec 6, 2023Updated 2 years ago
- localised duplicate detection on patterned flow cells☆10Feb 27, 2019Updated 7 years ago
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆19Mar 5, 2019Updated 7 years ago
- Parallel Block GZIP☆50Aug 4, 2016Updated 9 years ago
- metabCombiner R Package: Paired Untargeted Metabolomics Feature Matching & Data Concatenation☆13May 29, 2024Updated 2 years ago
- An implementation of Nextflow.io with Language Workbench Technology. The project helps create computational pipelines that run with the N…☆22Aug 9, 2016Updated 9 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Tools for bam file processing☆56Apr 20, 2015Updated 11 years ago
- ☆17Sep 24, 2013Updated 12 years ago
- APIs for discovering genomics tools, their metadata and their containers☆35Mar 28, 2026Updated 3 months ago
- GenoTypes Compressor☆16May 19, 2022Updated 4 years ago
- CWL CommandLineTool descriptions for biology/life-sciences related applications☆81Mar 25, 2025Updated last year
- Please consider using/contributing to https://github.com/nf-core/sarek☆18Jan 3, 2019Updated 7 years ago
- ☆12Dec 8, 2021Updated 4 years ago
- Wrapper for RTG's vcfeval; DEPRECATED!☆21Apr 8, 2016Updated 10 years ago
- TheSparkBox is an all-in-one Spark deployment that you can use to fire up a local cluster.☆12Jun 26, 2018Updated 8 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- [Legacy] Executor for CWL workflows. Executes sbg:draft-2 and CWL 1.0☆75Nov 18, 2020Updated 5 years ago
- Deprecated☆101Aug 12, 2019Updated 6 years ago
- ☆29Feb 17, 2021Updated 5 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆26Dec 11, 2017Updated 8 years ago
- Python utilities for CWL☆43Updated this week
- lncRNA-Py is a development package for applying machine learning and deep learning to the problem of lncRNA classification, i.e. predicti…☆12Jan 24, 2025Updated last year
- Minimal docker image for bwa. Not developed any more.☆11Apr 26, 2015Updated 11 years ago