nf-core / vscode-extensionpackLinks
A VSCode extension pack for nf-core developers.
☆15Updated 9 months ago
Alternatives and similar repositories for vscode-extensionpack
Users that are interested in vscode-extensionpack are comparing it to the libraries listed below
Sorting:
- Params validation plugin for Nextflow pipelines☆48Updated last year
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆36Updated 3 weeks ago
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Updated last year
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆47Updated 3 weeks ago
- Fast FASTQ sample demultiplexing in Rust.☆66Updated 3 weeks ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆55Updated last year
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- BigWig and BAM utilities☆99Updated last year
- An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.☆40Updated last week
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆50Updated last month
- A Nextflow workflow to generate lift over files for any pair of genomes☆69Updated last month
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆41Updated 2 years ago
- long read RNA-seq quantification☆97Updated last month
- ☆26Updated 8 months ago
- Simple utility to concatenate .fastq(.gz) files whilst creating a summary of the sequences.☆51Updated last month
- Splice junction analysis and filtering from BAM files☆42Updated 3 years ago
- This repository hosts a large collection of Nextflow snippets☆56Updated 11 months ago
- Fast sequencing data quality metrics☆31Updated 3 months ago
- a lexicographically-based GTF/GFF sorter☆37Updated 8 months ago
- Algorithm to detect germline and de novo transposon insertions☆31Updated 4 months ago
- ☆44Updated last year
- fusion transcript detection using long reads, leveraging ctat-minimap2 and FusionInspector☆23Updated 2 months ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆57Updated last week
- Fully automated generation of UCSC assembly hubs☆35Updated last year
- Runs a combination of tools to generate structural variant calls on whole-genome sequencing data☆48Updated 5 years ago
- LongcallR is a SNP caller for single molecule long-read RNA-seq data☆70Updated 2 weeks ago
- python plotly Circos from VCF☆40Updated last year
- ☆33Updated last month
- R API for browsing, analyzing, and manipulating reference-aligned genome graphs in a GenomicRanges framework☆41Updated 3 weeks ago
- Flexible and efficient parsing, interpreting and editing of sequencing reads☆44Updated 3 weeks ago