nf-core / tower-action

Related projects ⓘ

Alternatives and complementary repositories for tower-action

• Midnighter / nextflow-gotchas
  A collection of unexpected challenges and learnings with nextflow and nf-core.
  ☆34Updated last year
• qbic-pipelines / rnadeseq
  Differential gene expression analysis and pathway analysis of RNAseq data
  ☆32Updated 3 months ago
• luslab / luslab-nf-modules
  Luslab nextflow modules
  ☆14Updated 3 years ago
• nextflow-io / nf-hack18
  Nextflow workshop 2018 -- Training pages -> https://nextflow-io.github.io/nf-hack18/
  ☆18Updated 5 years ago
• seqeralabs / nf-training-advanced
  Customer workshop materials
  ☆16Updated last year
• micans / nextflow-idioms
  Short idioms and patterns for transforming, merging and managing files and channels in Nextflow.
  ☆16Updated 8 months ago
• biocorecrg / BioNextflow
  A collection of modules and sub-workflows for Nextflow
  ☆26Updated this week
• telatin / covtobed
  ⛰ covtobed | Convert the coverage track from a BAM file into a BED file
  ☆43Updated 2 years ago
• nilesh-tawari / ChronQC
  Manuscript describing ChronQC is now available online in Bioinformatics
  ☆17Updated 5 years ago
• seqeralabs / seqera-kit
  Python implementation and field-tool for automated pipeline launching through Tower CLI (beta)
  ☆25Updated 3 weeks ago
• peterk87 / sublime-nextflow
  Nextflow workflow syntax highlighting and snippets for Sublime Text 4
  ☆24Updated last year
• multimeric / TidyMultiqc
  Converts 'MultiQC' Reports into Tidy Data Frames
  ☆14Updated 7 months ago
• robsyme / nf-repeatmasking
  Nextflow workflow for automatic repeat detection, classification and masking
  ☆13Updated 6 years ago
• Kingsford-Group / squid
  SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data
  ☆41Updated 2 years ago
• fulcrumgenomics / fqtk
  Fast FASTQ sample demultiplexing in Rust.
  ☆57Updated 3 months ago
• brentp / tiwih
  simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.
  ☆44Updated last year
• goeckslab / isoseq-browser
  ☆13Updated 7 years ago
• NCBI-Hackathons / FlowBio
  A fast, easy way to present complex bioinformatics pipelines to biologists
  ☆11Updated 6 years ago
• myriad-opensource / samwell
  Samwell: a python package for using genomic files... well
  ☆19Updated 2 years ago
• nf-core / vscode-extensionpack
  A VSCode extension pack for nf-core developers.
  ☆14Updated last month
• gtrichard / deepStats
  deepStats: a stastitical toolbox for deeptools and genomic signals
  ☆32Updated 3 years ago
• thelovelab / fishpond
  Differential expression and allelic analysis, nonparametric statistics
  ☆27Updated last year
• s-andrews / BamQC
  Mapped QC analysis program
  ☆42Updated 6 years ago
• nf-core / readsimulator
  A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.
  ☆27Updated last month
• sigven / cacao
  Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer
  ☆21Updated 3 years ago
• nh13 / snakeparse
  Making Snakemake workflows into full-fledged command line tools since 1999.
  ☆51Updated 6 years ago
• cancerit / cgpBigWig
  BigWig manpulation tools using libBigWig and htslib
  ☆28Updated 3 months ago
• guigolab / grape-nf
  An automated RNA-seq pipeline using Nextflow
  ☆37Updated 2 months ago
• beardymcjohnface / Nektool
  Cookiecutter profile for making a NextFlow-based bioinformatics tool
  ☆16Updated 4 months ago