NCBI-Hackathons / SPeW
Automatic Packaging and Distribution of Bioinformatics Pipelines
☆26Updated 7 years ago
Alternatives and similar repositories for SPeW:
Users that are interested in SPeW are comparing it to the libraries listed below
- A collection of publications on comparison of high-throughput sequencing technologies.☆27Updated 3 months ago
- List of computational resources for analyzing microbial sequencing data.☆68Updated last year
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 3 years ago
- ☆19Updated 2 years ago
- Analysis from kallisto paper☆32Updated 9 years ago
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆35Updated last year
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 5 years ago
- conda recipes for genomic data☆85Updated 3 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated 8 months ago
- A collection of modules and sub-workflows for Nextflow☆26Updated this week
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Validate FastQ Files☆36Updated 6 years ago
- Predict mutated T-cell epitopes from sequencing data☆30Updated last month
- An open-source and scalable solution to NGS analysis powered by the NIH's Biowulf cluster.☆4Updated last year
- A standalone interactive application for detecting biological significance on a set of genes☆40Updated 3 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- Reference genome resource manager☆76Updated last year
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆59Updated 2 weeks ago
- Mutation Identification Pipeline. Read the latest documentation:☆44Updated last year
- Annotating principal splice isoforms☆14Updated 6 months ago
- Mapped QC analysis program☆43Updated 6 years ago
- Keep Me Around: Intron Retention Detection☆29Updated 6 years ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆65Updated 3 weeks ago
- Support code for NGS copy number algorithms. Takes a file of locations and a [cr|b]am file and generates a count of coverage of each alle…☆44Updated 2 years ago
- Simple vcf parser, based on PyVCF☆46Updated 6 years ago
- (WIP) best-practices workflow for rare disease☆60Updated 9 months ago
- Biological Graphic tool in Python☆34Updated 4 years ago
- ☆9Updated 5 months ago