NCBI-Hackathons / SPeW
Automatic Packaging and Distribution of Bioinformatics Pipelines
☆26Updated 7 years ago
Alternatives and similar repositories for SPeW:
Users that are interested in SPeW are comparing it to the libraries listed below
- deepStats: a stastitical toolbox for deeptools and genomic signals☆34Updated 3 years ago
- Analysis from kallisto paper☆32Updated 9 years ago
- Run Picard on BAM files and collate 90 metrics into one file.☆41Updated 7 years ago
- Biological Graphic tool in Python☆34Updated 4 years ago
- conda recipes for genomic data☆85Updated 3 years ago
- Toil workflows for common genomic pipelines☆33Updated 5 years ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆47Updated this week
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 6 years ago
- Mapped QC analysis program☆44Updated 6 years ago
- Tools for next-generation sequencing analysis☆88Updated 5 years ago
- Mutation Identification Pipeline. Read the latest documentation:☆44Updated last year
- Manuscript describing ChronQC is now available online in Bioinformatics☆18Updated 5 years ago
- De novo transcriptome assembler for short reads☆62Updated 7 years ago
- Parallel merging, squaring off and ensemble calling for genomic variants☆20Updated 5 years ago
- RetroSeq is a bioinformatics tool that searches for mobile element insertions from aligned reads in a BAM file and a library of reference…☆66Updated 2 years ago
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆50Updated 5 years ago
- SeqMonk NGS visualisation and analysis tool☆49Updated 3 months ago
- MetaSV: An accurate and integrative structural-variant caller for next generation sequencing☆55Updated 7 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- JAMM Peak Finder for Sequencing Datasets☆29Updated 5 years ago
- A collection of modules and sub-workflows for Nextflow☆26Updated this week
- List of computational resources for analyzing microbial sequencing data.☆68Updated last year
- Core functionality of the CGAT code☆33Updated 3 months ago
- Collection of CGAT NGS Pipelines☆43Updated 6 years ago
- GOMCL: a toolkit to cluster, evaluate, and extract non-redundant associations of Gene Ontology-based functions☆20Updated last year
- ☆19Updated 2 years ago
- A collection of publications on comparison of high-throughput sequencing technologies.☆27Updated 4 months ago
- Test data for MultiQC.☆22Updated this week
- UC Santa Cruz Computational Genomics Lab's Toil-based RNA-seq pipeline☆40Updated 4 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago