cbcrg / kallisto-nfLinks
A nextflow implementation of Kallisto & Sleuth RNA-Seq Tools
☆23Updated 7 years ago
Alternatives and similar repositories for kallisto-nf
Users that are interested in kallisto-nf are comparing it to the libraries listed below
Sorting:
- See the main fork of this repository here >>>☆38Updated 5 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆17Updated 6 years ago
- Mapped QC analysis program☆44Updated 7 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- An automated ChIP-seq pipeline using Nextfow☆18Updated 3 years ago
- BigWig manpulation tools using libBigWig and htslib☆29Updated last year
- filtering trio-based genetic variants in VCFs for clinical review☆21Updated 5 years ago
- Simultaneous detection of SNPs and Indels using a 16-genotype probabilistic model☆27Updated last year
- Expectation-Maximization algorithm for Allele-Specific Expression☆21Updated 2 years ago
- Validation runs using bcbio: germline, somatic, structural variant calling and RNA-seq analyses☆31Updated 3 years ago
- gnomAD browser pre-ASHG 2018☆33Updated 5 years ago
- Opossum is a tool to pre-process RNA-seq reads prior to variant calling.☆28Updated 7 years ago
- Preprocessing tools for unique molecular index (UMI) sequencing reads☆31Updated 2 years ago
- Analysis from kallisto paper☆32Updated 9 years ago
- novoBreak: local assembly for breakpoint detection in cancer genomes☆25Updated 7 years ago
- ALOFT, the Annotation Of Loss-of-Function Transcripts, provides extensive functional annotations to loss-of-function variants in the hum…☆19Updated 5 years ago
- conda recipes for genomic data☆84Updated 4 years ago
- DEPRECIATED! Please use nf-core/tools instead☆19Updated 7 years ago
- fast webservices based query tool for large sets of genomic features☆25Updated 5 months ago
- VisCap is an open flexible, software program targeted to clinical laboratories for inference and visualization of germline copy number va…☆22Updated 5 years ago
- DriverPower☆26Updated 9 months ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 4 years ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆39Updated 2 years ago
- MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers☆21Updated 8 years ago
- A Framework to call Structural Variants from NGS based datasets☆22Updated 7 years ago
- a Shiny/R application to view and annotate copy number variations☆28Updated 2 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Updated 4 years ago
- Using k-mers to call HLA alleles in RNA sequencing data☆23Updated 7 years ago
- Remove primer sequence from BAM alignments by soft-clipping☆31Updated 5 years ago