askimed / nf-test
Simple test framework for Nextflow pipelines
☆158Updated 3 months ago
Alternatives and similar repositories for nf-test:
Users that are interested in nf-test are comparing it to the libraries listed below
- Pipeline to fetch metadata and raw FastQ files from public databases☆173Updated last week
- A robust, extensible metagenomics pipeline☆169Updated 7 months ago
- Nanopore demultiplexing, QC and alignment pipeline☆194Updated this week
- Assembly and intrahost/low-frequency variant calling for viral samples☆133Updated this week
- A sequencing simulator☆195Updated last week
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆136Updated 3 years ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆209Updated last month
- GATK RNA-Seq Variant Calling in Nextflow☆134Updated 2 years ago
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆139Updated last week
- Genome browser and variant annotation☆297Updated this week
- Nextflow training material☆159Updated this week
- A minimap2 frontend for PacBio native data formats☆189Updated last month
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆101Updated 3 months ago
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆145Updated last year
- Tool to plot synteny and structural rearrangements between genomes☆300Updated last month
- Sequana: a set of Snakemake NGS pipelines☆146Updated last month
- Test data to be used for automated testing with the nf-core pipelines☆120Updated this week
- ☆89Updated 2 months ago
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆267Updated last month
- This Snakemake pipeline implements the GATK best-practices workflow☆249Updated last year
- ☆116Updated last week
- Benchmarking of long-read assembly tools for bacterial whole genomes☆170Updated 4 years ago
- ☆181Updated last week
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆213Updated this week
- Variant calling and somatic mutation/CNV detection for next-generation sequencing data☆157Updated 2 years ago
- A bioinformatics tool for working with modified bases☆180Updated 3 weeks ago
- An overview of all nanopack tools☆237Updated last year
- AdapterRemoval v2 - rapid adapter trimming, identification, and read merging☆111Updated last week
- Fast and accurately polish the genome generated by long reads.☆219Updated 2 months ago