Golob-Minot / geneshotLinks
☆29Updated last year
Alternatives and similar repositories for geneshot
Users that are interested in geneshot are comparing it to the libraries listed below
Sorting:
- Strain Resolution ON Graphs☆48Updated 2 years ago
- Unsupervised Clustering of Environmental Microbial Assemblies Using Coverage and Affinity Propagation☆31Updated 4 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆40Updated 11 months ago
- Scalable creating/updating of metagenome profiling databases☆63Updated 2 months ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 4 years ago
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- A comprehensive pipeline for short read metagenomic data☆24Updated 5 years ago
- ☆46Updated 2 years ago
- OPAL: Open-community Profiling Assessment tooL☆30Updated 7 months ago
- A pipeline for high-quality bacterial genome construction using ONT sequencing☆39Updated 2 years ago
- Computational workflows for metagenomics tasks, by the Bhatt lab☆47Updated 2 years ago
- AMBER: Assessment of Metagenome BinnERs☆32Updated 7 months ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆53Updated 2 months ago
- map Illumina metagenomes to genomes!☆39Updated this week
- Strain-level Metagenomic Estimation of Growth rate (SMEG) measures growth rates of microbial strains from complex metagenomic dataset☆20Updated 5 years ago
- MAG Circularization Method☆33Updated 3 years ago
- Course materials for the Genomics Aotearoa Metagenomics Summer School, to be hosted at the University of Auckland in Septermber☆63Updated 11 months ago
- Workflow to rapidly quantify taxa from all domains of life, directly from short-read human gut metagenomes☆65Updated last month
- PARTIE is a program to partition sequence read archive (SRA) metagenomics data into amplicon and shotgun data sets. The user-supplied ann…☆26Updated 2 years ago
- De novo Extraction of Strains from MetAgeNomes☆71Updated 5 years ago
- A package to annotate protein sequences☆60Updated 6 months ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆46Updated 2 years ago
- Functional Analysis of Metagenomes by Likelihood Inference☆17Updated 5 years ago
- Locus and lineage tests for bacterial GWAS☆29Updated 7 years ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆41Updated 2 weeks ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆35Updated last year
- Microbiome classification pipeline☆66Updated 3 months ago
- Protein Alignment and Detection Interface☆61Updated last year
- MetaCompass: Reference-guided Assembly of Metagenomes☆39Updated 2 weeks ago
- A method of assessing sequence complexity based on kmer frequencies☆32Updated 7 years ago