FredHutch / nf-anvio-pangenomeLinks
Analyze a set of genomes with the anvi'o pangenome pipeline
☆16Updated 2 years ago
Alternatives and similar repositories for nf-anvio-pangenome
Users that are interested in nf-anvio-pangenome are comparing it to the libraries listed below
Sorting:
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated 11 months ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 2 years ago
- MiCoP is a method for high-accuracy profiling of viral and fungal metagenomic communities.☆15Updated 3 years ago
- Tutorial for bacterial GWAS pipline and bugwas, created for Bodega Bay 2016 NGS workshop☆18Updated 9 years ago
- Protocols, data and code associated with the MK-SpikeSeq method for quantifying the absolute abundances of microbiota samples☆12Updated 4 years ago
- Dadaist2 🟨 Highway to R☆13Updated 8 months ago
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Updated 2 years ago
- A pipeline for performing genome-wide association tests for bacterial genomes.☆27Updated 7 years ago
- Influenza genome analysis Nextflow workflow☆24Updated 2 months ago
- A Shotgun Metagenome Annotation Pipeline☆23Updated 8 years ago
- hAMRoaster is an analysis pipeline that can compare the output of tools for detecting AMR genes and provide metrics of their performance☆22Updated last year
- MAG Circularization Method☆32Updated 2 weeks ago
- C++ tools for NCBI taxonomy tasks☆11Updated 4 months ago
- A containerized bioinformatics pipeline for viral metagenomic data analysis☆37Updated last year
- a pipeline for reconciliation of phylogenetic histories within a bacterial pangenome☆50Updated 3 years ago
- Metagenomic Intra-Species Diversity Analysis (MIDAS)☆39Updated last year
- Core ELEment Bias Removal In Metagenome Binned ORthologs: A pipeline to make pangenomes from MAGs☆25Updated last year
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆31Updated last year
- CAMITAX: Taxon labels for microbial genomes☆30Updated last year
- MetaSNV, a metagenomic SNV calling pipeline.☆20Updated 3 years ago
- De novo VIral Genome Annotator☆23Updated last year
- A pipeline for whole genome assembly☆16Updated 3 years ago
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 2 years ago
- Strain Prediction and Analysis with Representative SEquence☆19Updated 11 months ago
- ⚡️🧬 FastMLST: A multi-core tool for multilocus sequence typing of draft genome assemblies☆27Updated last month
- VIRULIGN: fast codon-correct alignment and annotation of viral genomes☆35Updated 4 years ago
- screening metagenomes for arbitrary lineages, using gene-centric assembly methods and phylogenetics☆11Updated 5 years ago
- Raspir, the rare species identifier☆11Updated 2 years ago
- Plot microbiome time series in parallel☆27Updated 2 years ago
- Download assembly files from NCBI☆13Updated 2 years ago