mribeirodantas / NextflowSnippetsLinks
This repository hosts a large collection of Nextflow snippets
☆56Updated 11 months ago
Alternatives and similar repositories for NextflowSnippets
Users that are interested in NextflowSnippets are comparing it to the libraries listed below
Sorting:
- Params validation plugin for Nextflow pipelines☆48Updated last year
- SARS-CoV-2 workflow for nanopore sequence data☆42Updated last month
- A post sequencing QC tool for Oxford Nanopore sequencers☆106Updated last month
- NGSNGS: Next generation simulator for next generation sequencing data☆56Updated last year
- ☆47Updated last month
- seqfu - Sequece Fastx Utilities☆124Updated 3 weeks ago
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆50Updated last month
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆64Updated last year
- A proof of concept daisy-chaining Nextflow workflows☆29Updated 4 months ago
- A catalogue of available long read sequencing data analysis tools☆83Updated last week
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆22Updated last month
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- Simple bacterial assembly and annotation pipeline☆80Updated last month
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆37Updated last month
- Experimental features for Nextflow☆47Updated 2 weeks ago
- A versatile toolkit for k-mers with taxonomic information☆81Updated 4 months ago
- Quickly calculate and visualize sequence coverage in alignment files☆101Updated 6 years ago
- Tips for Nextflow and cheatsheet for channel operation☆79Updated last year
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆41Updated 2 years ago
- Snakemake workflow for metagenomic classification with Kraken2☆66Updated 2 years ago
- A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.☆33Updated 7 months ago
- Web application to collect and visualise data across multiple MultiQC runs.☆95Updated last year
- ☆52Updated 3 months ago
- An accurate and ultra-fast adapter and quality trimming program for Illumina Next-Generation Sequencing (NGS) data.☆38Updated 3 months ago
- Just a Microbiology System (JAMS) - a suite for analyzing microbiological sequencing data for use on NIH HPC systems (Biowulf)☆25Updated this week
- 🏔 coverage extraction from BAM/CRAM files, supporting targets 📊☆65Updated last month
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆55Updated 6 months ago
- Grep for FASTQ files☆103Updated last month
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆35Updated last year
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆57Updated last month