mribeirodantas / NextflowSnippetsLinks
This repository hosts a large collection of Nextflow snippets
☆57Updated 5 months ago
Alternatives and similar repositories for NextflowSnippets
Users that are interested in NextflowSnippets are comparing it to the libraries listed below
Sorting:
- Params validation plugin for Nextflow pipelines☆48Updated 10 months ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆29Updated this week
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆42Updated last month
- SARS-CoV-2 workflow for nanopore sequence data☆41Updated 2 weeks ago
- A proof of concept daisy-chaining Nextflow workflows☆26Updated last month
- ☆40Updated this week
- Experimental features for Nextflow☆43Updated 3 months ago
- An accurate and ultra-fast adapter and quality trimming program for Illumina Next-Generation Sequencing (NGS) data.☆36Updated last month
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆20Updated 2 weeks ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆59Updated 9 months ago
- NGSNGS: Next generation simulator for next generation sequencing data☆52Updated 6 months ago
- Nextflow workflow template repository☆18Updated this week
- A versatile toolkit for k-mers with taxonomic information☆78Updated 10 months ago
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Updated 7 months ago
- vembrane filters VCF records using python expressions☆59Updated last week
- A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.☆31Updated 3 weeks ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆98Updated 3 months ago
- Filter SAM file for soft and hard clipped alignments☆49Updated last year
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆26Updated 2 weeks ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆47Updated 6 months ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆34Updated 11 months ago
- create a interactive coverage plot dashboard from bam files and add gb, vcf and bed tracks☆52Updated 2 weeks ago
- Design degenerated primers on highly variable alignments for full genome sequencing or qPCR. Specifically developed for viruses.☆37Updated 3 weeks ago
- Fully automated generation of UCSC assembly hubs☆34Updated 8 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆53Updated 8 months ago
- Scripts and programs for the Holt Lab's MinION desktop☆32Updated 4 years ago
- Simple pileup-based variant caller☆90Updated 2 months ago
- A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rate☆30Updated 3 years ago
- Nextflow Alignment Pipeline - from fastq.gz to sorted bam with ease☆20Updated last week