mribeirodantas / NextflowSnippetsLinks
This repository hosts a large collection of Nextflow snippets
☆57Updated 6 months ago
Alternatives and similar repositories for NextflowSnippets
Users that are interested in NextflowSnippets are comparing it to the libraries listed below
Sorting:
- Params validation plugin for Nextflow pipelines☆48Updated 11 months ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆99Updated last week
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆44Updated 3 weeks ago
- NGSNGS: Next generation simulator for next generation sequencing data☆52Updated 8 months ago
- Experimental features for Nextflow☆43Updated 4 months ago
- ☆42Updated this week
- A proof of concept daisy-chaining Nextflow workflows☆27Updated 2 months ago
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆21Updated this week
- seqfu - Sequece Fastx Utilities☆119Updated 6 months ago
- Simple bacterial assembly and annotation pipeline☆76Updated last week
- SARS-CoV-2 workflow for nanopore sequence data☆41Updated this week
- A catalogue of available long read sequencing data analysis tools☆78Updated 5 months ago
- A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.☆31Updated 2 months ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆52Updated 2 years ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆61Updated 10 months ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆50Updated last month
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 9 months ago
- A versatile toolkit for k-mers with taxonomic information☆80Updated last year
- Filter SAM file for soft and hard clipped alignments☆51Updated last year
- Get, parse, and extract information from the SRA metadata files☆44Updated 2 years ago
- Quickly calculate and visualize sequence coverage in alignment files☆99Updated 6 years ago
- Grep for FASTQ files☆99Updated 3 months ago
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆87Updated this week
- 🏔 coverage extraction from BAM/CRAM files, supporting targets 📊☆64Updated last month
- An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.☆32Updated this week
- Snakemake pipelines for nanopore sequencing data archiving and processing☆91Updated 3 years ago
- An accurate and ultra-fast adapter and quality trimming program for Illumina Next-Generation Sequencing (NGS) data.☆37Updated 2 months ago
- A bioinformatics tutorial demonstrating a best-practice workflow to review a flowcell's sequence_summary.txt☆31Updated 4 years ago
- Tips for Nextflow and cheatsheet for channel operation☆78Updated 11 months ago
- ☆49Updated 11 months ago