mribeirodantas / NextflowSnippetsLinks
This repository hosts a large collection of Nextflow snippets
☆57Updated 8 months ago
Alternatives and similar repositories for NextflowSnippets
Users that are interested in NextflowSnippets are comparing it to the libraries listed below
Sorting:
- Params validation plugin for Nextflow pipelines☆48Updated last year
- NGSNGS: Next generation simulator for next generation sequencing data☆54Updated 10 months ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆103Updated 2 months ago
- ☆46Updated this week
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆45Updated last week
- seqfu - Sequece Fastx Utilities☆120Updated last week
- Simple bacterial assembly and annotation pipeline☆78Updated 3 weeks ago
- A nextflow pipeline for decontamination of short reads, long reads and contigs☆54Updated 3 months ago
- 🏔 coverage extraction from BAM/CRAM files, supporting targets 📊☆64Updated 3 months ago
- Experimental features for Nextflow☆45Updated last month
- SARS-CoV-2 workflow for nanopore sequence data☆41Updated 2 months ago
- A catalogue of available long read sequencing data analysis tools☆78Updated last week
- A proof of concept daisy-chaining Nextflow workflows☆26Updated last month
- A framework to build Software As A Service (SaaS) platforms for Nextflow pipelines.☆16Updated last month
- A pipeline to simulate sequencing reads, such as Amplicon, Target Capture, Metagenome, and Whole genome data.☆32Updated 4 months ago
- More realistic simulator for genomic DNA sequences from Illumina machines that achieves a similar k-mer spectrum as the original☆51Updated 3 years ago
- catalog for long-read sequencing tools☆32Updated 2 years ago
- Multi-platform genome assembly pipeline for Illumina, Nanopore and PacBio reads☆63Updated last year
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆21Updated last week
- Nextflow workflow template repository☆17Updated last week
- Grep for FASTQ files☆98Updated 5 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated 11 months ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆36Updated this week
- ☆23Updated this week
- A pipeline to run and systematically evaluate Multiple Sequence Alignment (MSA) methods.☆37Updated this week
- Tips for Nextflow and cheatsheet for channel operation☆80Updated last year
- Get, parse, and extract information from the SRA metadata files☆45Updated 3 years ago
- Workflow to prepare high accuracy single molecule consensus sequences from amplicon data using unique molecular identifiers☆34Updated last year
- python plotly Circos from VCF☆39Updated last year
- ☆35Updated 2 years ago