nf-core / airrflowLinks
B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
☆71Updated 3 weeks ago
Alternatives and similar repositories for airrflow
Users that are interested in airrflow are comparing it to the libraries listed below
Sorting:
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆63Updated 6 months ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆86Updated 2 weeks ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆120Updated 3 weeks ago
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆83Updated 4 years ago
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- A toolset for profiling alternative splicing events in RNA-Seq data.☆83Updated 11 months ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆39Updated 10 months ago
- ☆72Updated 2 years ago
- CoMut is a Python library for visualizing genomic and phenotypic information via comutation plots☆96Updated last year
- Tools for working with BUS files☆102Updated 7 months ago
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Updated last week
- A workflow for enhanced protein isoform detection through integration of long-read RNA-seq and mass spectrometry-based proteomics.☆50Updated 2 years ago
- machine-readable file format for genomic library sequence and structure☆126Updated 3 months ago
- A Python library to visualize and analyze long-read transcriptomes☆64Updated 7 months ago
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆97Updated last week
- ☆50Updated 4 years ago
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated 2 months ago
- A tool for bigWig files.☆118Updated 7 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆55Updated 10 months ago
- Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from…☆31Updated 6 months ago
- FRASER - Find RAre Splicing Events in RNA-seq☆51Updated last month
- Quantification of transposable element expression using RNA-seq☆77Updated last year
- Convert Counts to Fragments per Kilobase of Transcript per Million (FPKM)☆63Updated 4 years ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- Estimation of Promoter Activity from RNA-Seq data☆56Updated 5 months ago
- nextNEOpi: a comprehensive pipeline for computational neoantigen prediction☆81Updated 6 months ago
- Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed in…☆122Updated 2 months ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆52Updated last month
- Check strandedness of RNA-Seq fastq files☆128Updated 3 years ago
- RNAseq pipeline based on snakemake☆26Updated 2 years ago