nf-core / airrflowLinks
B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
☆69Updated last week
Alternatives and similar repositories for airrflow
Users that are interested in airrflow are comparing it to the libraries listed below
Sorting:
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆63Updated 5 months ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆119Updated last month
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆50Updated last month
- Workflows for processing RNA data for germline short variant discovery with GATK v4 and related tools☆81Updated 4 years ago
- A Snakemake workflow for differential expression analysis of RNA-seq data with Kallisto and Sleuth.☆68Updated 2 weeks ago
- Unsorted scripts for bioinformatics☆61Updated 4 years ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆84Updated last week
- A toolset for profiling alternative splicing events in RNA-Seq data.☆82Updated 9 months ago
- A Python library to visualize and analyze long-read transcriptomes☆63Updated 6 months ago
- ☆72Updated 2 years ago
- A tool for accurately detecting actively translating ORFs from Ribo-seq data☆39Updated 9 months ago
- Quantification of transposable element expression using RNA-seq☆76Updated last year
- ☆50Updated 4 years ago
- Ultraperformant reimplementation of SICER☆58Updated 4 years ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆77Updated last month
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated last month
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆93Updated this week
- Publication quality NGS track plotting☆115Updated last month
- A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methyl…☆47Updated 2 years ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆97Updated this week
- Tools for working with BUS files☆102Updated 5 months ago
- SingleCell Nanopore sequencing data analysis☆61Updated 5 months ago
- Precision HLA typing from next-generation sequencing data☆73Updated last month
- RNAseq pipeline based on snakemake☆26Updated 2 years ago
- BAMscale is a one-step tool for either 1) quantifying and normalizing the coverage of peaks or 2) generated scaled BigWig files for easy …☆72Updated 11 months ago
- RepEnrich2 is an updated method to estimate repetitive element enrichment using high-throughput sequencing data.☆41Updated 3 years ago
- optimization of ribosome P-site positioning in ribosome profiling data☆55Updated 8 months ago
- FRASER - Find RAre Splicing Events in RNA-seq☆50Updated 2 weeks ago
- Config files used to define parameters specific to compute environments at different Institutions☆104Updated this week
- ☆29Updated last year