B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework
☆81Aug 28, 2026Updated this week
Alternatives and similar repositories for airrflow
Users that are interested in airrflow are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆29Updated this week
- A pipeline for the analysis of CRISPR edited data. It allows the evaluation of the quality of gene editing experiments using targeted nex…☆62Jul 27, 2026Updated last month
- Software for Ontogenic aNalysis of Antibody Repertoires☆19Jun 30, 2026Updated 2 months ago
- RNA-seq analysis pipeline for detection of gene-fusions☆174Jul 24, 2026Updated last month
- CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.☆11Updated this week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package☆128Aug 19, 2026Updated 2 weeks ago
- Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads☆16Dec 5, 2023Updated 2 years ago
- Precision HLA typing from next-generation sequencing data☆81Updated this week
- Analysis pipeline for the identification of viral integration events in genomes using a chimeric read approach.☆19Jul 28, 2026Updated last month
- IMGT segment library converted to RepSeq.IO JSON format☆14Mar 21, 2023Updated 3 years ago
- ☆19Jul 7, 2026Updated last month
- Config files used to define parameters specific to compute environments at different Institutions☆111Updated this week
- A pipeline to investigate horizontal gene transfer from NGS data☆27Updated this week
- Genotyping Immunoglobulin Heavy Chain Variable Genes using Short Read Data☆12May 9, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- imNet: a Sequence Network Construction Toolkit☆20Jul 7, 2020Updated 6 years ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆56Updated this week
- A pipeline for processing Molecular Cartography data from Resolve Bioscience (combinatorial FISH)☆14Updated this week
- Pipeline for the identification of extrachromosomal circular DNA (ecDNA) from Circle-seq, WGS, and ATAC-seq data that were generated from…☆35Updated this week
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆597Updated this week
- B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction☆64Updated this week
- ☆27Jun 5, 2025Updated last year
- ☆22Updated this week
- Simple bacterial assembly and annotation pipeline☆93Updated this week
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Demultiplexing pipeline for sequencing data☆59Updated this week
- Allele-Specific Quantification of Structural Variations in Cancer Genomes☆19Mar 5, 2019Updated 7 years ago
- Single-cell/nuclei pipeline for data derived from Oxford Nanopore and 10X Genomics☆56Jul 28, 2026Updated last month
- Renders a collection of sequences into a pangenome graph. https://doi.org/10.1093/bioinformatics/btae609.☆109Updated this week
- UVC, a very accurate small-variant caller (https://doi.org/10.1093/bib/bbab458)☆14May 18, 2025Updated last year
- An analysis pipeline for Nanostring nCounter expression data.☆18Jul 28, 2026Updated last month
- Nascent Transcription Processing Pipeline☆25Updated this week
- GitHub Action to launch a workflow using Nextflow Tower.☆12Mar 28, 2023Updated 3 years ago
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆68Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆51Updated this week
- Pipeline to fetch metadata and raw FastQ files from public databases☆200Updated this week
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆243Feb 12, 2026Updated 6 months ago
- See the main fork of this repository here >>>☆39Aug 21, 2026Updated last week
- A pipeline for de novo transcriptome assembly of paired-end short reads from bulk RNA-seq☆26Updated this week
- Detecting TCR involved in immune responses from single RepSeq datasets☆28Jun 17, 2019Updated 7 years ago
- T/B cell receptor sequencing analysis notes☆281Dec 1, 2024Updated last year