nf-core / fetchngsLinks
Pipeline to fetch metadata and raw FastQ files from public databases
☆175Updated 2 weeks ago
Alternatives and similar repositories for fetchngs
Users that are interested in fetchngs are comparing it to the libraries listed below
Sorting:
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆224Updated last week
- Nanopore demultiplexing, QC and alignment pipeline☆201Updated last week
- Download FASTQ files from SRA or ENA repositories.☆330Updated 2 months ago
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆210Updated last week
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆78Updated last week
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆150Updated 2 years ago
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆214Updated last month
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆224Updated 3 weeks ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆148Updated last week
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆270Updated 4 months ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆138Updated 3 years ago
- Web application to explore the Sequence Read Archive.☆217Updated 2 months ago
- Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)☆166Updated this week
- Genome Assembly and Annotation Service code☆212Updated last year
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel☆167Updated this week
- Tool to plot synteny and structural rearrangements between genomes☆306Updated last month
- Nextflow training material☆171Updated this week
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆256Updated 3 weeks ago
- A collection of scripts and notes related to genomics and bioinformatics☆211Updated last month
- Assembly and intrahost/low-frequency variant calling for viral samples☆137Updated 3 weeks ago
- Easier download/extract of FASTA/Q read data and metadata from the ENA, NCBI, AWS or GCP.☆269Updated 2 weeks ago
- Full-Length Alternative Isoform analysis of RNA☆228Updated last week
- ☆94Updated 2 weeks ago
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆102Updated last month
- GraffiTE is a pipeline that finds polymorphic transposable elements in genome assemblies and/or long reads, and genotypes the discovered …☆188Updated 2 weeks ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆129Updated this week
- Generate IGV style locus tracks from bigWig files in R☆162Updated 7 months ago
- ATAC-seq peak-calling and QC analysis pipeline☆201Updated 3 weeks ago
- Match up paired end fastq files quickly and efficiently.☆149Updated last year