nf-core / fetchngs
Pipeline to fetch metadata and raw FastQ files from public databases
☆174Updated this week
Alternatives and similar repositories for fetchngs:
Users that are interested in fetchngs are comparing it to the libraries listed below
- Download FASTQ files from SRA or ENA repositories.☆323Updated last month
- Tool for the Quality Control of Long-Read Defined Transcriptomes☆221Updated this week
- Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads☆212Updated 3 weeks ago
- Nanopore demultiplexing, QC and alignment pipeline☆201Updated this week
- PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.☆268Updated 3 months ago
- Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads☆108Updated 2 years ago
- Tool to plot synteny and structural rearrangements between genomes☆303Updated 3 weeks ago
- Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data☆137Updated 3 years ago
- RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.☆251Updated last week
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆144Updated this week
- Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)☆149Updated 2 years ago
- Web application to explore the Sequence Read Archive.☆216Updated last month
- Assembly and intrahost/low-frequency variant calling for viral samples☆137Updated this week
- Genome browser and variant annotation☆302Updated last month
- Reference-guided transcript discovery and quantification for long read RNA-Seq data☆207Updated 2 weeks ago
- This Snakemake pipeline implements the GATK best-practices workflow☆253Updated last year
- ☆185Updated last week
- (Not Offical) BBMap short read aligner, and other bioinformatic tools.☆227Updated 4 years ago
- classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF☆215Updated 9 months ago
- ☆91Updated 2 weeks ago
- Nextflow training material☆163Updated this week
- Full-Length Alternative Isoform analysis of RNA☆225Updated this week
- Read trimming tool for Illumina NGS data.☆134Updated 10 years ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆127Updated 3 months ago
- ☆206Updated 3 months ago
- Genome Assembly and Annotation Service code☆211Updated last year
- Discovering known and novel miRNAs from small RNA sequencing data☆147Updated 8 months ago
- Methylation (Bisulfite-Sequencing) analysis pipeline using Bismark or bwa-meth + MethylDackel☆165Updated this week
- Match up paired end fastq files quickly and efficiently.☆149Updated 11 months ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆78Updated this week