Alternatives and similar repositories for fetchngs:

Users that are interested in fetchngs are comparing it to the libraries listed below

• nf-core / nanoseq
  Nanopore demultiplexing, QC and alignment pipeline
  ☆189Updated this week
• GenomeRIK / tama
  Transcriptome Annotation by Modular Algorithms (for long read RNA sequencing data)
  ☆138Updated last year
• rpetit3 / fastq-dl
  Download FASTQ files from SRA or ENA repositories.
  ☆294Updated 3 months ago
• timkahlke / LongRead_tutorials
  Workflows and tutorials for LongRead analysis with specific focus on Oxford Nanopore data
  ☆133Updated 3 years ago
• ConesaLab / SQANTI3
  Tool for the Quality Control of Long-Read Defined Transcriptomes
  ☆203Updated this week
• nanoporetech / pipeline-transcriptome-de
  Pipeline for differential gene expression (DGE) and differential transcript usage (DTU) analysis using long reads
  ☆106Updated last year
• PacificBiosciences / IsoSeq
  Iso-Seq - Scalable De Novo Isoform Discovery from Single-Molecule PacBio Reads
  ☆200Updated 3 months ago
• mhammell-laboratory / TEtranscripts
  A package for including transposable elements in differential enrichment analysis of sequencing datasets.
  ☆238Updated 3 months ago
• gpertea / gffcompare
  classify, merge, tracking and annotation of GFF files by comparing to a reference annotation GFF
  ☆209Updated 6 months ago
• Magdoll / cDNA_Cupcake
  Miscellaneous collection of Python and R scripts for processing Iso-Seq data
  ☆261Updated last year
• schneebergerlab / plotsr
  Tool to plot synteny and structural rearrangements between genomes
  ☆294Updated 2 months ago
• NBISweden / GAAS
  Genome Assembly and Annotation Service code
  ☆206Updated last year
• GoekeLab / bambu
  Reference-guided transcript discovery and quantification for long read RNA-Seq data
  ☆196Updated this week
• ewels / sra-explorer
  Web application to explore the Sequence Read Archive.
  ☆209Updated 3 weeks ago
• nextflow-io / training
  Nextflow training material
  ☆136Updated this week
• PacificBiosciences / pbbioconda
  PacBio Secondary Analysis Tools on Bioconda. Contains list of PacBio packages available via conda.
  ☆259Updated 7 months ago
• snakemake-workflows / dna-seq-gatk-variant-calling
  This Snakemake pipeline implements the GATK best-practices workflow
  ☆245Updated last year
• Dfam-consortium / RepeatMasker
  RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences.
  ☆240Updated 2 months ago
• nf-core / taxprofiler
  Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data
  ☆135Updated this week
• suhrig / arriba
  Fast and accurate gene fusion detection from RNA-Seq data
  ☆231Updated 2 months ago
• kcleal / gw
  Genome browser and variant annotation
  ☆290Updated this week
• BioInfoTools / BBMap
  (Not Offical) BBMap short read aligner, and other bioinformatic tools.
  ☆215Updated 3 years ago
• BrooksLabUCSC / flair
  Full-Length Alternative Isoform analysis of RNA
  ☆216Updated this week
• epi2me-labs / wf-transcriptomes
  ☆83Updated 3 weeks ago
• ablab / IsoQuant
  Transcript discovery and quantification with long RNA reads (Nanopores and PacBio)
  ☆155Updated this week
• TransDecoder / TransDecoder
  TransDecoder source
  ☆283Updated 3 months ago
• CompEpigen / figeno
  Tool for plotting sequencing data along genomic coordinates.
  ☆257Updated last week
• nf-core / mag
  Assembly and binning of metagenomes
  ☆226Updated this week
• igordot / genomics
  A collection of scripts and notes related to genomics and bioinformatics
  ☆200Updated 2 months ago
• gpertea / gffread
  GFF/GTF utility providing format conversions, region filtering, FASTA sequence extraction and more
  ☆393Updated last month