B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction
☆64Aug 31, 2026Updated this week
Alternatives and similar repositories for partis
Users that are interested in partis are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Code and data used in The Great Repertoire Project☆30Jun 14, 2021Updated 5 years ago
- Software for Ontogenic aNalysis of Antibody Repertoires☆19Jun 30, 2026Updated 2 months ago
- Software and test files for Recon: Reconstruction of Estimated Communities from Observed Numbers☆14Dec 16, 2025Updated 8 months ago
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆45Mar 30, 2026Updated 5 months ago
- High-throughput mapping and domain partitioning of antigen receptor sequences☆56Aug 15, 2026Updated 2 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- imNet: a Sequence Network Construction Toolkit☆20Jul 7, 2020Updated 6 years ago
- Infer selection pressures on features of amino acid CDR3 sequences.☆25Apr 17, 2024Updated 2 years ago
- Immunoglobulin and T-Cell receptor rearrangement software☆52Jan 9, 2026Updated 7 months ago
- B-cell repertoire and clonal family tree explorer☆18Updated this week
- Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads☆16Dec 5, 2023Updated 2 years ago
- ☆38Nov 27, 2023Updated 2 years ago
- Analysis of antibody NGS data☆13Mar 19, 2026Updated 5 months ago
- ☆19Nov 18, 2025Updated 9 months ago
- Python Toolbox For Rosetta Silent Files Processing☆10Aug 2, 2021Updated 5 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- 🧛 Deep generative models for TCR sequences 🧛☆17Apr 4, 2022Updated 4 years ago
- Summary statistics for repertoires☆17Feb 1, 2023Updated 3 years ago
- An UMI-tagged sequencing swiss-knife. Built for amplicon sequencing of immune repertoires, ctDNA and rare mutations, single-cell sequenci…☆43Aug 18, 2026Updated 2 weeks ago
- Git-based antigen specificity database storage & management.☆155Aug 26, 2026Updated last week
- R package for the analysis of single-cell immune repertoires☆45Feb 7, 2025Updated last year
- Convert TCR gene names☆15Dec 26, 2025Updated 8 months ago
- IgSimulator is a versatile tool for simulation of immunoglobulin repertoire☆12Nov 25, 2016Updated 9 years ago
- Analysis of immune repertoire sequencing results☆145Aug 20, 2026Updated last week
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Oct 11, 2019Updated 6 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.☆399Jul 10, 2026Updated last month
- Tool for rapid clustering of antibody models by the structure of their CDRs.☆26Jul 14, 2025Updated last year
- A pipeline for complete and accurate recovery of TCR repertoires from high throughput sequencing data.☆23Sep 10, 2023Updated 2 years ago
- AIRR Community Data Standards☆41Aug 11, 2026Updated 3 weeks ago
- Absolve antibody variable domain sequence analysis☆18Sep 13, 2018Updated 7 years ago
- Tools for processing immunosequencing data☆11Apr 9, 2026Updated 4 months ago
- ☆12Aug 26, 2024Updated 2 years ago
- ☆30Dec 17, 2019Updated 6 years ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆81Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- IMSEQ - IMmunogenetic SEQuence Analysis☆15Aug 10, 2018Updated 8 years ago
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆69Nov 18, 2025Updated 9 months ago
- 🧬 immunarch [R package] – Multi-Modal Immune Repertoire Analytics for Immunotherapy and Vaccine Design☆342Aug 18, 2026Updated 2 weeks ago
- GCtree: phylogenetic inference of genotype-collapsed trees☆18Aug 27, 2024Updated 2 years ago
- Mapping the Functional Landscape of TCR Repertoire☆36Oct 8, 2021Updated 4 years ago
- pygor3 repository☆10Nov 20, 2025Updated 9 months ago
- Code examples for working with web based bioinformatics APIs☆10Feb 17, 2017Updated 9 years ago