psathyrella / partisLinks
B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction
☆59Updated this week
Alternatives and similar repositories for partis
Users that are interested in partis are comparing it to the libraries listed below
Sorting:
- Code and data used in The Great Repertoire Project☆30Updated 4 years ago
- ☆38Updated last year
- HTS-compatible wrapper for IgBlast V-(D)-J mapping tool☆52Updated 9 months ago
- IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:☆51Updated 3 years ago
- Absolve antibody variable domain sequence analysis☆17Updated 6 years ago
- Python package to plot sequence logos☆29Updated last year
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆68Updated this week
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆57Updated 3 years ago
- Immunoglobulin and T-Cell receptor rearrangement software☆49Updated last year
- Python biomart API☆67Updated 2 years ago
- Python port of the R Bioconductor `seqLogo` package☆34Updated last year
- Infer selection pressures on features of amino acid CDR3 sequences.☆25Updated last year
- Python interface to running command-line and web-based MHC binding predictors☆98Updated 10 months ago
- Predicting gene expression levels from genomic sequences☆53Updated 5 years ago
- Parsing tools for GTF (gene transfer format) files☆121Updated 5 months ago
- off-targeting assessment of Cas9 gRNAs☆13Updated 4 years ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆51Updated 2 months ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆40Updated last month
- flexible CDR based distance metrics☆66Updated 11 months ago
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆57Updated last month
- HLA-II ligand predictor.☆44Updated 2 years ago
- Efficient algorithms for designing orthogonal DNA sequence libraries☆13Updated 9 months ago
- Decombinator v5: fast, error-correcting analysis of TCR repertoires☆26Updated this week
- ☆48Updated 3 years ago
- Analysis of antibody NGS data☆12Updated 3 years ago
- Companion to "A genome-wide almanac of co-essential modules assigns function to uncharacterized genes" (https://doi.org/10.1101/827071)☆27Updated 3 years ago
- Flexible analysis of high-content CRISPR screening☆31Updated 4 months ago
- ☆40Updated 4 years ago
- FREE Divergence Error-Correcting DNA Barcodes☆27Updated 6 months ago
- Absolute quantification package based on quantms.io☆14Updated 2 months ago