psathyrella / partis
B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction
☆58Updated last week
Alternatives and similar repositories for partis:
Users that are interested in partis are comparing it to the libraries listed below
- Code and data used in The Great Repertoire Project☆30Updated 3 years ago
- IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:☆51Updated 2 years ago
- HTS-compatible wrapper for IgBlast V-(D)-J mapping tool☆52Updated 4 months ago
- ☆37Updated last year
- Python biomart API☆65Updated last year
- ☆47Updated 2 years ago
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆50Updated 3 years ago
- Python package to plot sequence logos☆29Updated last year
- Absolve antibody variable domain sequence analysis☆16Updated 6 years ago
- A simple pythonic interface to biomart.☆55Updated 5 years ago
- Comparison of Adaptive Immune Receptor Repertoires☆26Updated last month
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆37Updated last week
- predicting peptide and TCR interaction☆20Updated 4 years ago
- Python port of the R Bioconductor `seqLogo` package☆33Updated 7 months ago
- HLA-II ligand predictor.☆41Updated last year
- MuPeXI: the mutant peptide extractor and informer, a tool for predicting neo-epitopes from tumor sequencing data.☆49Updated 5 years ago
- off-targeting assessment of Cas9 gRNAs☆13Updated 3 years ago
- Absolute quantification package based on quantms.io☆13Updated last month
- Downloader for ENCODE☆32Updated 4 years ago
- A pipeline for complete and accurate recovery of TCR repertoires from high throughput sequencing data.☆21Updated last year
- BraCeR - reconstruction of B cell receptor sequences from single-cell RNAseq data☆42Updated 6 months ago
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆38Updated 6 years ago
- Package to Score Sequences using Rule Set 3☆11Updated last year
- Merging paired-end reads and removing adapters☆44Updated 4 years ago
- Decombinator v5: fast, error-correcting analysis of TCR repertoires☆22Updated 3 months ago
- Parse GFF3 into Pandas dataframes☆27Updated last year
- Infer selection pressures on features of amino acid CDR3 sequences.☆24Updated 10 months ago
- iCodon customizes gene expression based on the codon composition☆14Updated last year
- A bioinformatics best-practice analysis pipeline for epitope prediction and annotation☆42Updated 2 weeks ago
- An algorithm for error-correction of immunosequencing Illumina MiSeq reads and immunoproteogenomic analysis☆18Updated 6 years ago