ma-compbio / Weaver
Allele-Specific Quantification of Structural Variations in Cancer Genomes
☆17Updated 5 years ago
Related projects ⓘ
Alternatives and complementary repositories for Weaver
- Structural variation and indel detection using rolling local string graph assembly☆9Updated 8 years ago
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 3 months ago
- Pan gGnome Viewer☆10Updated 9 months ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 6 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 4 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- ☆11Updated 6 years ago
- Allele frequency filter app☆14Updated 2 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆13Updated 5 years ago
- Hemang Parikh☆11Updated 8 years ago
- Qtip: a tandem simulation approach for accurately predicting read alignment mapping qualities☆25Updated 5 years ago
- Haplotype-based somatic genome simulator☆10Updated 7 years ago
- BED QC tool (in the making)☆15Updated 2 years ago
- Novel Adjacency Identification with Barcoded Reads☆13Updated 2 years ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 8 years ago
- ☆21Updated last year
- IndexTools is a toolkit for extremely fast NGS analysis based on index files.☆17Updated 2 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 6 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- ☆23Updated 4 years ago
- A tool for Read Multi-Mapper Resolution☆24Updated 7 years ago
- ☆13Updated 7 years ago
- ☆12Updated last year
- Detects human contamination in bam files☆16Updated 4 years ago
- Allele frequency filtering for Mendelian variant discovery☆17Updated 8 years ago
- extract SV signal from a BAM☆11Updated 6 years ago
- Building the constrained coding regions (CCR) model☆16Updated 5 years ago
- ☆15Updated 2 months ago