ma-compbio / Weaver
Allele-Specific Quantification of Structural Variations in Cancer Genomes
☆17Updated 6 years ago
Alternatives and similar repositories for Weaver
Users that are interested in Weaver are comparing it to the libraries listed below
Sorting:
- ☆11Updated 6 years ago
- Structural variation and indel detection using rolling local string graph assembly☆9Updated 8 years ago
- Pan gGnome Viewer☆10Updated last year
- Ximmer is a system for CNV calling on exome and targeted genomic sequencing☆19Updated 3 months ago
- A tool for Read Multi-Mapper Resolution☆23Updated 8 years ago
- A wrapper for calling small variants from human germline high-coverage single-sample Illumina data☆14Updated 5 years ago
- Mostly deprecated in favor of : https://github.com/hbc/bcbioRNASeq. Quality control, differential gene/transcript expression and pathway …☆24Updated 7 years ago
- Haplotype-based somatic genome simulator☆10Updated 7 years ago
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆17Updated 5 years ago
- Clonal reconstruction from HTS data☆10Updated 3 years ago
- Hemang Parikh☆11Updated 9 years ago
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆22Updated 3 years ago
- ☆13Updated 7 years ago
- Machine learning use cases for teaching☆13Updated 7 years ago
- R Interface to the NCBI SRA metadata☆23Updated 6 years ago
- Modeling and correcting fragment sequence bias for RNA-seq☆24Updated 11 months ago
- CLI to automate Nextflow pipeline testing☆12Updated 2 months ago
- BreakSeq2: Ultrafast and accurate nucleotide-resolution analysis of structural variants☆24Updated 9 years ago
- Allele frequency filter app☆14Updated 3 years ago
- Callable Cancer Loci - assessment of sequencing coverage for actionable and pathogenic loci in cancer☆21Updated 4 years ago
- Building the constrained coding regions (CCR) model☆16Updated 6 years ago
- Stupid Simple Structural Variant View☆25Updated 8 years ago
- Bedfile perturbation tool☆17Updated last year
- Improved multi-sample transcript abundance estimates using adaptive priors☆20Updated 6 years ago
- picking up low allelic-fraction, somatic variants from tumor samples☆14Updated 7 years ago
- ☆22Updated last year
- Chromatin segmentation in R☆19Updated 7 years ago
- Novel Adjacency Identification with Barcoded Reads☆13Updated 3 years ago
- Simplifies parallel processing of DNA sequencing reads☆9Updated 7 months ago
- iAnnotateSV is a Python library and command-line software toolkit to annotate and visualize structural variants detected from Next Genera…☆16Updated last month