nf-core / demultiplexLinks
Demultiplexing pipeline for sequencing data
☆51Updated 3 weeks ago
Alternatives and similar repositories for demultiplex
Users that are interested in demultiplex are comparing it to the libraries listed below
Sorting:
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆93Updated last week
- Params validation plugin for Nextflow pipelines☆48Updated last year
- Tip and tricks for BAM files☆86Updated 7 years ago
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆84Updated this week
- Precision HLA typing from next-generation sequencing data☆73Updated last month
- Web application to collect and visualise data across multiple MultiQC runs.☆95Updated 11 months ago
- Tips for Nextflow and cheatsheet for channel operation☆80Updated last year
- Config files used to define parameters specific to compute environments at different Institutions☆104Updated this week
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆89Updated last year
- This repository hosts a large collection of Nextflow snippets☆56Updated 9 months ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆49Updated last week
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆142Updated 2 months ago
- Pipeline to evaluate and validate the accuracy of variant calling methods in genomic research☆36Updated last week
- BigWig and BAM utilities☆98Updated last year
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Updated last year
- Reference genome resource manager☆74Updated last year
- Powerful statistics for VCF files☆72Updated this week
- EM based transcript abundance from nanopore reads mapped to a transcriptome with minimap2☆64Updated last year
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆89Updated 3 months ago
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆40Updated 2 years ago
- TIDDIT - structural variant calling☆77Updated 7 months ago
- Ultraperformant reimplementation of SICER☆58Updated 4 years ago
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆45Updated 3 weeks ago
- Grep for FASTQ files☆102Updated 7 months ago
- Experimental features for Nextflow☆45Updated 2 months ago
- ExomeDepth R package for the detection of copy number variants in exomes and gene panels using high throughput DNA sequencing data.☆74Updated 4 months ago
- A catalogue of available long read sequencing data analysis tools☆80Updated last month
- Fast FASTQ sample demultiplexing in Rust.☆66Updated last week
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 9 months ago
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆72Updated last week