nf-core / demultiplexLinks
Demultiplexing pipeline for sequencing data
☆47Updated 3 weeks ago
Alternatives and similar repositories for demultiplex
Users that are interested in demultiplex are comparing it to the libraries listed below
Sorting:
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆79Updated this week
- ☆40Updated this week
- Lima - Demultiplex Barcoded PacBio Samples☆67Updated last month
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆42Updated last month
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆75Updated last week
- A post sequencing QC tool for Oxford Nanopore sequencers☆98Updated 3 months ago
- Variant Calling Pipeline Using GATK4 and Nextflow☆56Updated 2 years ago
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Updated 7 months ago
- Params validation plugin for Nextflow pipelines☆48Updated 10 months ago
- Wally: Visualization of aligned sequencing reads and contigs☆118Updated 2 months ago
- Snakemake pipelines for nanopore sequencing data archiving and processing☆90Updated 3 years ago
- Tip and tricks for BAM files☆85Updated 6 years ago
- This repository hosts a large collection of Nextflow snippets☆57Updated 5 months ago
- Precision HLA typing from next-generation sequencing data☆67Updated 3 weeks ago
- ☆48Updated 10 months ago
- BAM Statistics, Feature Counting and Annotation☆150Updated 4 months ago
- An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.☆32Updated this week
- A catalogue of available long read sequencing data analysis tools☆77Updated 3 months ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆43Updated 3 weeks ago
- An R package to Identify, Annoatate and Visialize Isoform Switches with Functional Consequences (from RNA-seq data)☆114Updated 4 months ago
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆62Updated 3 months ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆47Updated this week
- A tool to identify, orient, trim and rescue full length cDNA reads☆82Updated 2 years ago
- A package for quantifying transposable elements at a locus level for RNAseq datasets.☆27Updated 4 months ago
- Tips for Nextflow and cheatsheet for channel operation☆76Updated 10 months ago
- GenMap - Fast and Exact Computation of Genome Mappability☆107Updated last year
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 4 months ago
- ENCODE long read RNA-seq pipeline☆48Updated 2 years ago
- BigWig and BAM utilities☆96Updated last year
- FEELnc : FlExible Extraction of LncRNA☆87Updated 9 months ago