nf-core / demultiplexLinks
Demultiplexing pipeline for sequencing data
☆51Updated this week
Alternatives and similar repositories for demultiplex
Users that are interested in demultiplex are comparing it to the libraries listed below
Sorting:
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆84Updated this week
- Params validation plugin for Nextflow pipelines☆48Updated last year
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆89Updated this week
- Grep for FASTQ files☆98Updated 6 months ago
- Precision HLA typing from next-generation sequencing data☆73Updated 2 weeks ago
- Tips for Nextflow and cheatsheet for channel operation☆80Updated last year
- Tip and tricks for BAM files☆86Updated 7 years ago
- Web application to collect and visualise data across multiple MultiQC runs.☆95Updated 10 months ago
- gatk4 RNA variant calling pipeline☆54Updated last week
- A catalogue of available long read sequencing data analysis tools☆80Updated last month
- This repository hosts a large collection of Nextflow snippets☆56Updated 9 months ago
- Detecting contamination in NGS data and multi-species analysis☆79Updated 11 months ago
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆88Updated last year
- A simple toolset for BED files (warning: CLI may change before bedtk becomes stable)☆142Updated 2 months ago
- A post sequencing QC tool for Oxford Nanopore sequencers☆103Updated 3 months ago
- 10x Genomics Linked-Read Diploid De Novo Assembler☆65Updated 6 years ago
- BigWig and BAM utilities☆98Updated last year
- Experimental features for Nextflow☆45Updated 2 months ago
- An analysis pipeline for long-reads from both PacBio and Oxford Nanopore Technologies (ONT), written in Nextflow.☆35Updated last week
- A C++ drop-in replacement of FastQC to assess the quality of sequence read data☆119Updated 2 months ago
- A VSCode extension pack for nf-core developers.☆15Updated 7 months ago
- Functionality for working with pipeline and sample sheet schema files in Nextflow pipelines☆45Updated this week
- Examples showing how to configure Nextflow to run with Wave containers provisioning service☆21Updated 11 months ago
- An R package for estimating poly(A)-tail lengths in Oxford Nanopore RNA and DNA reads.☆54Updated last year
- TIDDIT - structural variant calling☆77Updated 6 months ago
- Powerful statistics for VCF files☆72Updated 3 months ago
- Building SuperTranscripts: A linear representation of transcriptome data☆67Updated 4 years ago
- Per-base per-nucleotide depth analysis☆142Updated last month
- BAM Statistics, Feature Counting and Annotation☆150Updated last week
- A collection of unexpected challenges and learnings with nextflow and nf-core.☆40Updated 2 years ago