Demultiplexing pipeline for sequencing data
☆54Apr 10, 2026Updated this week
Alternatives and similar repositories for demultiplex
Users that are interested in demultiplex are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆27Apr 2, 2026Updated last week
- Dedicated QC-only pipeline for sequencing data. The pipeline will run a (potentially large) set of QC tools and can output global and gro…☆24Apr 8, 2026Updated last week
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆91Updated this week
- Nascent Transcription Processing Pipeline☆22Nov 20, 2025Updated 4 months ago
- Compare the quality of multiple genomes, along with their annotations.☆20Mar 24, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Customer workshop materials☆19Apr 8, 2026Updated last week
- Pipeline to fetch metadata and raw FastQ files from public databases☆190Feb 8, 2026Updated 2 months ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆49Updated this week
- Classic hello world script in Nextflow language☆23Feb 6, 2026Updated 2 months ago
- Automatically source dotenv files into your Nextflow scope☆10Mar 27, 2026Updated 2 weeks ago
- nf-core/phyloplace is a bioinformatics best-practice analysis pipeline that performs phylogenetic placement with EPA-NG.☆12Nov 20, 2025Updated 4 months ago
- Analysis pipeline for the identification of viral integration events in genomes using a chimeric read approach.☆18Jun 3, 2025Updated 10 months ago
- ☆10Jan 20, 2022Updated 4 years ago
- Test data to be used for automated testing with the nf-core pipelines☆159Updated this week
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Simple bacterial assembly and annotation pipeline☆85Mar 24, 2026Updated 3 weeks ago
- A collection of Groovy classes that provide utility services to nextflow pipelines.☆13Oct 25, 2022Updated 3 years ago
- (Meta-)genome screening for functional and natural product gene sequences☆104Mar 30, 2026Updated 2 weeks ago
- Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.☆13Jun 3, 2025Updated 10 months ago
- A GitHub action to install Nextflow☆29Updated this week
- Nanopore demultiplexing, QC and alignment pipeline☆223Nov 20, 2025Updated 4 months ago
- Assembly and scaffolding of haploid / unphased genomes from long ONT or PacBio HiFi reads☆33Nov 20, 2025Updated 4 months ago
- Nextflow language support for Visual Studio Editor☆37Updated this week
- Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcri…☆72Apr 5, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- Automated optimisation of de-novo transcriptome assembly☆25Nov 11, 2015Updated 10 years ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆75Mar 18, 2026Updated 3 weeks ago
- Single-cell RNA-Seq pipeline for barcode-based protocols such as 10x, DropSeq or SmartSeq, offering a variety of aligners and empty-dropl…☆320Mar 25, 2026Updated 3 weeks ago
- A pipeline to investigate horizontal gene transfer from NGS data☆26Nov 20, 2025Updated 4 months ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Dec 3, 2024Updated last year
- Python package with helper tools for the nf-core community.☆298Updated this week
- RNA-seq analysis pipeline for detection of gene-fusions☆173Mar 18, 2026Updated 3 weeks ago
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆34Apr 4, 2025Updated last year
- A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences☆64Mar 3, 2026Updated last month
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- Highly parallelised multi-taxonomic profiling of shotgun short- and long-read metagenomic data☆184Updated this week
- Protein 3D structure prediction pipeline☆104Mar 27, 2026Updated 2 weeks ago
- The Nextflow language server☆29Apr 7, 2026Updated last week
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Jul 3, 2025Updated 9 months ago
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆24Nov 20, 2025Updated 4 months ago
- Experimental plugin to integrate GPT like prompt into Nextflow☆17Apr 15, 2024Updated 2 years ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆36Jun 30, 2024Updated last year