mehdiborji / nanorangerLinks
simplified cellranger for long-read data
☆19Updated 3 months ago
Alternatives and similar repositories for nanoranger
Users that are interested in nanoranger are comparing it to the libraries listed below
Sorting:
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆40Updated 3 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 6 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆36Updated last year
- Feature-rich Python implementation of the tximport package for gene count estimation.☆39Updated last month
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- ☆34Updated 3 weeks ago
- Annotation and segmentation of MAS-seq data☆20Updated 2 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆29Updated 2 years ago
- ☆23Updated 4 years ago
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆14Updated 2 weeks ago
- ☆20Updated 6 years ago
- A comprehensive toolkit for mutational signature analysis☆42Updated last year
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆30Updated 8 months ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- Long read to rMATS☆32Updated 2 years ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 7 years ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 6 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆17Updated 3 years ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆41Updated last year
- EasyFuse is a pipeline for accurate fusion gene detection from RNA-seq data.☆62Updated 2 months ago
- Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow☆29Updated last year
- SCASA: Single cell transcript quantification tool☆22Updated 2 years ago
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Updated 2 years ago
- iread☆25Updated 4 years ago
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- Workflow for Sequenza, cellularity and ploidy☆25Updated 3 months ago
- An R package for predicting HR deficiency from mutation contexts☆30Updated 9 months ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆35Updated 3 years ago