mehdiborji / nanoranger
simplified cellranger for long-read data
☆18Updated 6 months ago
Alternatives and similar repositories for nanoranger:
Users that are interested in nanoranger are comparing it to the libraries listed below
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated last year
- ☆23Updated 3 years ago
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 5 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago
- CLIP-seq Analysis of Multi-mapped reads☆29Updated 3 years ago
- Annotation and segmentation of MAS-seq data☆20Updated last year
- ChIP-seq DC and QC Pipeline☆34Updated 4 years ago
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆14Updated last week
- Versatile FASTA/FASTQ demultiplexer.☆33Updated 9 months ago
- Perform differential transcript usage (DTU) analysis of bulk or single-cell RNA-seq data. See documentation at:☆20Updated 11 months ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆28Updated last year
- RNAmotifs is an integrated R, C++, python softwares that evaluates the sequence around differentially regulated alternative exons to iden…☆9Updated 6 years ago
- TIMEOR: Trajectory Inference and Mechanism Exploration with Omics Data in R☆16Updated 3 years ago
- Scripts to install as a Bioconda package for making workflows☆18Updated 6 months ago
- Uncertainty-aware quantification of Transposable Elements expression in scRNA-seq☆16Updated last month
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆32Updated 2 years ago
- Code to calculate the Splicing Z Score (SpliZ) for single cell RNA-seq splicing analysis☆32Updated 3 years ago
- Next-Gen Sequencing tools from the Horvath Lab☆39Updated this week
- A flexible framework to annotate and prioritize cancer somatic mutations.☆8Updated 7 years ago
- ☆15Updated 2 years ago
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆27Updated last year
- Differential ATAC-seq toolkit☆27Updated last year
- Snakemake pipeline for running MAJIQ☆19Updated last year
- An R package to plot maps of clone distributions in somatic evolution☆17Updated last year
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 5 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 2 years ago
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆27Updated 3 years ago
- A toolkit for working with ATAC-seq data.☆24Updated 9 months ago
- Combined mutation recurrence and functional impact to identify coding and non-coding cancer drivers☆15Updated 6 years ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year