mehdiborji / nanorangerLinks
simplified cellranger for long-read data
☆19Updated 4 months ago
Alternatives and similar repositories for nanoranger
Users that are interested in nanoranger are comparing it to the libraries listed below
Sorting:
- software for analysis of chromatin feature occupancy profiles from high-throughput sequencing data☆17Updated 6 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆41Updated 3 years ago
- Versatile FASTA/FASTQ demultiplexer.☆33Updated last year
- Feature-rich Python implementation of the tximport package for gene count estimation.☆41Updated 2 months ago
- A statistical tool to detect differential alternative splicing events using single-cell RNA-seq☆22Updated 2 years ago
- ☆23Updated 4 years ago
- Identify cell barcodes from single-cell genomics sequencing experiments☆43Updated 4 years ago
- Benchmarking long-read RNA-seq analysis tools☆27Updated 10 months ago
- ☆40Updated 5 months ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 7 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆31Updated 9 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- A tool for annotation-free differential analysis of tissue-specific pre-mRNA alternative splicing patterns☆29Updated 2 years ago
- Annotation and segmentation of MAS-seq data☆20Updated 2 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆23Updated 9 years ago
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆14Updated last month
- ChIP-seq DC and QC Pipeline☆36Updated 4 years ago
- ☆34Updated last month
- RepEnrich is a method to estimate repetitive element enrichment using high-throughput sequencing data.☆28Updated 3 years ago
- ☆20Updated 6 years ago
- LIONS is a bioinformatic analysis pipeline which brings together a few pieces of software and some home-brewed scripts to annotate a p…☆30Updated 5 years ago
- Predicting TF sequence-specificity similarity with weighted alignments☆13Updated 6 years ago
- deepStats: a stastitical toolbox for deeptools and genomic signals☆35Updated 4 years ago
- Sigflow: Streamline Analysis Workflows for Mutational Signatures, https://github.com/ShixiangWang/sigflow/pkgs/container/sigflow☆29Updated last year
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- Reconstructs complex variation using Bionano optical mapping data and breakpoint graph data☆19Updated 2 years ago
- ☆22Updated 5 years ago
- Long read to rMATS☆32Updated 2 years ago
- Junction Based Analysis of Splicing Events for RNA-Seq☆33Updated 3 months ago
- MAnorm2 for Normalizing and Comparing ChIP-seq Samples☆31Updated 3 years ago