svalkiers / clusTCR
CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offering functionalities for downstream analysis of clustering results.
☆50Updated 7 months ago
Related projects ⓘ
Alternatives and complementary repositories for clusTCR
- ☆37Updated 4 years ago
- HLA-II ligand predictor.☆35Updated last year
- flexible CDR based distance metrics☆55Updated 3 months ago
- Code and data used in The Great Repertoire Project☆29Updated 3 years ago
- Collection of papers related to BCR repertoire analyses☆17Updated 2 years ago
- ☆38Updated 11 months ago
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆48Updated 3 years ago
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…☆26Updated last year
- TCRconv is a deep learning model for predicting recognition between T cell receptors and epitopes. It uses protBERT embeddings for the TC…☆23Updated 2 years ago
- ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction☆29Updated 2 years ago
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆50Updated last month
- bioinformatics plotting and tools☆53Updated 5 months ago
- Computational Optimization of DNA Activity (CODA)☆39Updated 2 months ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆62Updated this week
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆33Updated 2 years ago
- MHC Class I and Class II neoantigen binding prediction☆26Updated last year
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆113Updated last year
- Deep Learning Method to Identify Cancer Associated TCRs☆45Updated 2 years ago
- Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python☆28Updated 2 years ago
- Predicting gene expression levels from genomic sequences☆50Updated 4 years ago
- predicting peptide and TCR interaction☆20Updated 3 years ago
- Functional Embedding of Gene Signatures☆36Updated 8 months ago
- Clonotype Neighbor Graph Analysis☆81Updated 2 months ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆90Updated 3 years ago
- APA Regression Net - Predict and Engineer Alternative Polyadenylation☆37Updated 3 years ago
- Fast Gene Set Enrichment Analysis (GSEA) implementation of the prerank algorithm. Use Loess interpolation of bimodal ES distribution for …☆40Updated 3 months ago
- IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:☆48Updated 2 years ago
- A simple pythonic interface to biomart.☆55Updated 4 years ago
- Comparison of Adaptive Immune Receptor Repertoires☆25Updated last year
- code to run EPInformer for gene expression prediction and gene-enhancer links prioritization☆31Updated 2 weeks ago