CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offering functionalities for downstream analysis of clustering results.
☆55Apr 3, 2024Updated 2 years ago
Alternatives and similar repositories for clusTCR
Users that are interested in clusTCR are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- flexible CDR based distance metrics☆71Dec 16, 2025Updated 4 months ago
- Ultrafast TCR clustering algorithm based on geometric isometry☆74Oct 16, 2024Updated last year
- Highly specific clustering of T cell receptor CDR3s☆43Jun 21, 2022Updated 3 years ago
- T cell Receptor and B cell Receptor assembly from single cell RNA sequencing data☆10Aug 27, 2017Updated 8 years ago
- Clonotype Neighbor Graph Analysis☆95Feb 12, 2026Updated 2 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆87Oct 6, 2021Updated 4 years ago
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆64Mar 12, 2026Updated last month
- ☆18Apr 20, 2025Updated 11 months ago
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆237Feb 12, 2026Updated 2 months ago
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆64Nov 18, 2025Updated 4 months ago
- immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.☆74Apr 9, 2026Updated last week
- ☆15Jun 27, 2024Updated last year
- Integrative analysis for scRNA-seq and scTCR-/scBCR-seq data☆21Updated this week
- ☆14Oct 16, 2025Updated 6 months ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Quantifiable predictive features define epitope-specific T cell receptor repertoires☆13Dec 8, 2022Updated 3 years ago
- ☆38Nov 27, 2023Updated 2 years ago
- imNet: a Sequence Network Construction Toolkit☆20Jul 7, 2020Updated 5 years ago
- Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2…☆30Jul 12, 2025Updated 9 months ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆95Dec 4, 2020Updated 5 years ago
- Infer selection pressures on features of amino acid CDR3 sequences.☆25Apr 17, 2024Updated last year
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆28Oct 1, 2022Updated 3 years ago
- A barcode demultiplexer for Oxford Nanopore long-read amplicon sequencing data☆10Nov 27, 2024Updated last year
- ☆13May 27, 2025Updated 10 months ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ☆17Jun 24, 2021Updated 4 years ago
- python tools for TCR:peptide-MHC modeling and analysis☆91Apr 12, 2024Updated 2 years ago
- An ultra-sensitive and precise tool for characterizing T cell CDR3 sequences in TCR-seq and RNA-seq data.☆21Nov 19, 2025Updated 4 months ago
- IMSEQ - IMmunogenetic SEQuence Analysis☆15Aug 10, 2018Updated 7 years ago
- Deep Learning Method to Identify Cancer Associated TCRs☆46Aug 2, 2022Updated 3 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Oct 11, 2019Updated 6 years ago
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…☆30Jan 31, 2023Updated 3 years ago
- The code for UniPMT☆18Mar 16, 2025Updated last year
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆75Mar 18, 2026Updated 3 weeks ago
- Wordpress hosting with auto-scaling - Free Trial • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- 🗂️ Git-based TCR database storage & management. Submissions welcome!☆153Mar 27, 2026Updated 2 weeks ago
- ☆22Oct 4, 2022Updated 3 years ago
- A tool for de novo clustering of long transcriptomic reads☆15Oct 2, 2022Updated 3 years ago
- ☆18Feb 12, 2026Updated 2 months ago
- Code associated with MIX-seq manuscript☆15Aug 26, 2020Updated 5 years ago
- Summary statistics for repertoires☆17Feb 1, 2023Updated 3 years ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆122Sep 16, 2025Updated 7 months ago