imNet: a Sequence Network Construction Toolkit
☆20Jul 7, 2020Updated 6 years ago
Alternatives and similar repositories for imnet
Users that are interested in imnet are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- An algorithm for error-correction of immunosequencing Illumina MiSeq reads and immunoproteogenomic analysis☆18Nov 1, 2018Updated 7 years ago
- ☆20Dec 9, 2021Updated 4 years ago
- Tools for processing immunosequencing data☆11Apr 9, 2026Updated 5 months ago
- High-throughput mapping and domain partitioning of antigen receptor sequences☆56Aug 15, 2026Updated last month
- ☆14Mar 18, 2022Updated 4 years ago
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Detecting TCR involved in immune responses from single RepSeq datasets☆28Jun 17, 2019Updated 7 years ago
- B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction☆65Updated this week
- Vidjil -- High-throughput Analysis of V(D)J Immune Repertoire (mirror, please go to http://gitlab.vidjil.org)☆32Jun 29, 2026Updated 2 months ago
- ☆15Jul 16, 2026Updated 2 months ago
- ☆22Aug 2, 2023Updated 3 years ago
- Single-cell immune repertoire trajectory analysis in R☆12Aug 8, 2025Updated last year
- Software and test files for Recon: Reconstruction of Estimated Communities from Observed Numbers☆14Dec 16, 2025Updated 9 months ago
- Comparative evaluation of different methods for TCR clustering☆12Aug 28, 2018Updated 8 years ago
- AIRR Community Data Standards☆41Updated this week
- Bare Metal GPUs on DigitalOcean Gradient AI • AdPurpose-built for serious AI teams training foundational models, running large-scale inference, and pushing the boundaries of what's possible.
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆82Sep 11, 2026Updated last week
- IMSEQ - IMmunogenetic SEQuence Analysis☆15Aug 10, 2018Updated 8 years ago
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆45Sep 8, 2026Updated 2 weeks ago
- CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offer…☆57Apr 3, 2024Updated 2 years ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆97Dec 4, 2020Updated 5 years ago
- A pipeline for complete and accurate recovery of TCR repertoires from high throughput sequencing data.☆23Sep 10, 2023Updated 3 years ago
- Code for paired TCR data analysis from TIRTL-seq experiments☆14Nov 24, 2025Updated 9 months ago
- p-IgGen: A Generative Paired Antibody Language Model☆13May 6, 2025Updated last year
- IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:☆54Jan 7, 2026Updated 8 months ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- flexible CDR based distance metrics☆75Dec 16, 2025Updated 9 months ago
- Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info☆71Mar 12, 2026Updated 6 months ago
- This is a repo for the Machine Learning Immunogenicity Team in the August 2016 NCBI Hackathon☆25Oct 28, 2016Updated 9 years ago
- Python-based framework for computational immunomics☆40Jul 7, 2021Updated 5 years ago
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…☆30Jan 31, 2023Updated 3 years ago
- KA-Search: Rapid and exhaustive sequence identity search of known antibodies☆23Jul 9, 2024Updated 2 years ago
- ☆15Oct 11, 2019Updated 6 years ago
- SUPREME: A GCN based approach for cancer subtype prediction☆18Aug 9, 2023Updated 3 years ago
- A R statistical software package for estimating attributable influenza morbidity & mortality☆14Jun 6, 2019Updated 7 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Utilities for analyzing mutations and neoepitopes in patient cohorts☆20Jun 7, 2018Updated 8 years ago
- Collection of papers related to BCR repertoire analyses☆20Jan 21, 2022Updated 4 years ago
- CellAnn☆12Nov 3, 2023Updated 2 years ago
- Highly specific clustering of T cell receptor CDR3s☆43Jun 21, 2022Updated 4 years ago
- Predicting TCR:pMHC binding from structural data☆28Sep 4, 2026Updated 2 weeks ago
- Collection of datasets for network research.☆16Jul 26, 2020Updated 6 years ago
- Absolve antibody variable domain sequence analysis☆18Sep 13, 2018Updated 8 years ago