Precision HLA typing from next-generation sequencing data
☆80Jun 13, 2026Updated this week
Alternatives and similar repositories for hlatyping
Users that are interested in hlatyping are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- HLA typing for Sanger Based Test☆20Apr 7, 2023Updated 3 years ago
- R package enabling statistical association analysis and using immunogenetic data transformation functions for HLA amino acid fine mapping…☆14Jan 31, 2024Updated 2 years ago
- RNA-seq analysis pipeline for detection of gene-fusions☆174Jun 2, 2026Updated last week
- A bioinformatics best-practice analysis pipeline for epitope prediction and annotation☆52May 25, 2026Updated 3 weeks ago
- Converts bam or cram files to fastq format and does quality control.☆32Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Pipeline for RNA and DNA integrated analysis for somatic mutation detection☆13May 20, 2026Updated 3 weeks ago
- Precision HLA typing from next-generation sequencing data☆219May 20, 2026Updated 3 weeks ago
- R package specialized in HLA typing clustering and visualization based on specific similarity metrics☆14Nov 21, 2019Updated 6 years ago
- xHLA: Fast and accurate HLA typing from short read sequence data☆115Oct 13, 2023Updated 2 years ago
- Kourami: Graph-guided assembly for HLA alleles☆41May 21, 2019Updated 7 years ago
- Github for files currently published in the IPD-IMGT/HLA FTP Directory hosted at the European Bioinformatics Institute☆259Apr 17, 2026Updated last month
- Nascent Transcription Processing Pipeline☆23Apr 30, 2026Updated last month
- Experimental plugin to integrate GPT like prompt into Nextflow☆17Apr 15, 2024Updated 2 years ago
- Singularity port of HLA typing based on an input exome BAM file and is currently infers infers alleles for the three major MHC class I (…☆14Jan 15, 2017Updated 9 years ago
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆80Jun 5, 2026Updated last week
- An analysis pipeline for Nanostring nCounter expression data.☆18Apr 30, 2026Updated last month
- Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing☆574Updated this week
- ☆26Dec 4, 2019Updated 6 years ago
- gatk4 RNA variant calling pipeline☆61Jun 3, 2026Updated last week
- Analysis pipeline for the identification of viral integration events in genomes using a chimeric read approach.☆18Jun 3, 2025Updated last year
- ⛏ HLA predictions from NGS shotgun data☆56Jun 4, 2026Updated last week
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆24Apr 30, 2026Updated last month
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆28Updated this week
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- A GitHub action to install Nextflow☆29Jun 8, 2026Updated last week
- Bayesian-based fetal genotyping using maternal cell-free DNA and parental sequencing data.☆14Jun 5, 2019Updated 7 years ago
- Package to design primers for MutaSeq and related methods☆11Jan 15, 2021Updated 5 years ago
- A software for haplotype inference☆13May 13, 2025Updated last year
- Framework to benchmark algorithms when detecting germline copy number variations (CNVs) from NGS data☆14Dec 24, 2024Updated last year
- A collection of modules to process and analyze IMGT-HLA sequences.☆29Dec 18, 2022Updated 3 years ago
- A bioinformatics pipeline to phase and impute genetic data☆32Updated this week
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆34Apr 4, 2025Updated last year
- HLA-TAPAS pipeline for HLA association and fine-mapping studies☆57Dec 19, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- WES HLA Typing based on multiple alternative tools☆18Mar 8, 2021Updated 5 years ago
- Python for HLA analysis: summary, association analysis, zygosity test and interaction test☆37Apr 8, 2026Updated 2 months ago
- Call and score variants from WGS/WES of rare disease patients.☆117Updated this week
- A nextflow pipeline which integrates multiple omic data streams and performs coordinated analysis☆11May 9, 2024Updated 2 years ago
- An R package for Standardized Summary, Annotation, Comparison, and Visualization of CNV, CNVR and ROH☆15Oct 17, 2021Updated 4 years ago
- Python-based framework for computational immunomics☆15Updated this week
- CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.☆11Updated this week