nf-core / epitopeprediction
A bioinformatics best-practice analysis pipeline for epitope prediction and annotation
☆42Updated 2 weeks ago
Alternatives and similar repositories for epitopeprediction:
Users that are interested in epitopeprediction are comparing it to the libraries listed below
- HLA-I ligand predictor☆34Updated 2 months ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆37Updated last week
- Comparison of Adaptive Immune Receptor Repertoires☆26Updated last month
- A set of Shiny apps to provide interactive enrichment analysis and exploration of results.☆28Updated last month
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆71Updated last week
- Python package and command line tool for epitope prediction☆51Updated 7 months ago
- B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction☆58Updated this week
- Comprehensive Python client for the Uniprot REST API☆46Updated 6 months ago
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆33Updated 2 weeks ago
- Template-based RNA secondary structure visualization☆25Updated 3 months ago
- A Python package for mapping sequence aligned data onto protein structures☆34Updated 3 years ago
- An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies☆30Updated 2 weeks ago
- Absolve antibody variable domain sequence analysis☆16Updated 6 years ago
- PRedictor of IMmunogenic Epitopes☆17Updated 9 months ago
- Tool for deep mutational scanning experiments.☆48Updated this week
- ☆37Updated last year
- HLA-II ligand predictor.☆41Updated last year
- iCodon customizes gene expression based on the codon composition☆14Updated last year
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆24Updated last year
- Automated quantitative analysis of DIA proteomics mass spectrometry measurements.☆17Updated 2 months ago
- Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.☆19Updated last month
- Open source short linear motif discovery and sequence analysis☆23Updated 5 months ago
- Codon usage tables in code-friendly format + Python bindings☆35Updated last month
- ScanFold is an RNA sequence scanning pipeline which attempts to identify potentially functional RNA secondary structures. This is done by…☆17Updated 2 years ago
- Deep learning model to predict degron sequences☆19Updated 2 years ago
- G4Hunter (2012_2015)- IECB - Bordeaux☆13Updated 4 years ago
- All the fun and adventure of MHC naming, now in Python☆10Updated 2 years ago
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆25Updated 2 months ago
- software for the analysis and visualization of deep mutational scanning data☆34Updated 2 years ago