nf-core / epitopepredictionLinks
A bioinformatics best-practice analysis pipeline for epitope prediction and annotation
☆46Updated last week
Alternatives and similar repositories for epitopeprediction
Users that are interested in epitopeprediction are comparing it to the libraries listed below
Sorting:
- Comprehensive Python client for the Uniprot REST API☆50Updated 3 weeks ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆40Updated 2 weeks ago
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆36Updated last week
- A BioJS viewer for protein sequence features☆50Updated 2 years ago
- Visualise RNA secondary structure in consistent, reproducible and recognisable layouts☆74Updated last month
- Python Implementation of Codon Adaption Index☆37Updated 2 years ago
- HLA-I ligand predictor☆41Updated 6 months ago
- R package for functionally scoring phosphorylation sites☆20Updated 5 years ago
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆27Updated 6 months ago
- ☆38Updated last year
- PRedictor of IMmunogenic Epitopes☆23Updated 2 months ago
- Examples for gget (https://github.com/pachterlab/gget).☆37Updated 2 months ago
- Codon usage tables in code-friendly format + Python bindings☆37Updated 2 months ago
- Comparison of Adaptive Immune Receptor Repertoires☆27Updated 5 months ago
- Python interface to running command-line and web-based MHC binding predictors☆97Updated 9 months ago
- A Python package for mapping sequence aligned data onto protein structures☆35Updated 4 years ago
- Deep learning embedding for nucleotide sequences☆19Updated 3 months ago
- ☆66Updated 4 months ago
- iCodon customizes gene expression based on the codon composition☆15Updated last year
- Absolute quantification package based on quantms.io☆14Updated 2 months ago
- software for the analysis and visualization of deep mutational scanning data☆35Updated 2 years ago
- Python package to plot sequence logos☆29Updated last year
- Python package and command line tool for epitope prediction☆51Updated 11 months ago
- G4Hunter (2012_2015)- IECB - Bordeaux☆15Updated 5 years ago
- HLA-II ligand predictor.☆44Updated 2 years ago
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Updated 2 years ago
- Python interface to amino acid properties and IEDB☆56Updated 9 months ago
- Detects hotspot regions for somatic mutations in 3D protein structures☆3Updated last year
- Find common blocks and differences between DNA sequences☆42Updated 3 months ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆24Updated last year