nf-core / epitopepredictionLinks
A bioinformatics best-practice analysis pipeline for epitope prediction and annotation
☆49Updated last week
Alternatives and similar repositories for epitopeprediction
Users that are interested in epitopeprediction are comparing it to the libraries listed below
Sorting:
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆43Updated last week
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆42Updated last week
- Comprehensive Python client for the Uniprot REST API☆54Updated 2 months ago
- PRedictor of IMmunogenic Epitopes☆25Updated 3 months ago
- MetaLogo: a heterogeneity-aware sequence logo generator and aligner☆21Updated 2 years ago
- Comparison of Adaptive Immune Receptor Repertoires☆28Updated 10 months ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆25Updated 2 years ago
- HLA-I ligand predictor☆43Updated 3 months ago
- Examples for gget (https://github.com/pachterlab/gget).☆39Updated 3 months ago
- R package for functionally scoring phosphorylation sites☆21Updated 6 years ago
- Multi-Omics Peptide Generator☆30Updated last month
- HLA-II ligand predictor.☆45Updated 2 years ago
- DRUGZ software☆25Updated 4 years ago
- Absolute quantification package based on quantms.io☆16Updated 3 months ago
- Deep learning embedding for nucleotide sequences☆19Updated 9 months ago
- G4Hunter (2012_2015)- IECB - Bordeaux☆16Updated 5 years ago
- Automated quantitative analysis of DIA proteomics mass spectrometry measurements.☆20Updated 11 months ago
- ☆38Updated 2 years ago
- software for the analysis and visualization of deep mutational scanning data☆34Updated 3 years ago
- Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake☆30Updated 11 months ago
- Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.☆24Updated 6 months ago
- Codon usage tables in code-friendly format + Python bindings☆41Updated 7 months ago
- Deep learning model to predict degron sequences☆19Updated 2 years ago
- A BioJS viewer for protein sequence features☆52Updated 3 years ago
- An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.☆94Updated last year
- autoprot provides standardised, fast, and reliable proteomics data analysis while ensuring a high customisability needed to tailor the an…☆10Updated 2 weeks ago
- Tool for deep mutational scanning experiments.☆56Updated 9 months ago
- iCodon customizes gene expression based on the codon composition☆15Updated 2 years ago
- DIABLO - an integrative multi-group, multi-dataset classification method☆26Updated 6 years ago
- ☆23Updated last month