Alternatives and similar repositories for epitopeprediction:

Users that are interested in epitopeprediction are comparing it to the libraries listed below

• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆36Updated last week
• GfellerLab / MixMHCpred
  HLA-I ligand predictor
  ☆30Updated 3 weeks ago
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆26Updated last year
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆44Updated 5 months ago
• psathyrella / partis
  B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction
  ☆57Updated last week
• ctokheim / deepDegron
  Deep learning model to predict degron sequences
  ☆19Updated last year
• andrewguy / biostructmap
  A Python package for mapping sequence aligned data onto protein structures
  ☆34Updated 3 years ago
• jbloomlab / dms_tools2
  software for the analysis and visualization of deep mutational scanning data
  ☆33Updated 2 years ago
• dmnfarrell / epitopepredict
  Python package and command line tool for epitope prediction
  ☆49Updated 5 months ago
• FowlerLab / Enrich2
  Tool for deep mutational scanning experiments.
  ☆47Updated 3 weeks ago
• Benjamin-Lee / CodonAdaptationIndex
  Python Implementation of Codon Adaption Index
  ☆35Updated last year
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆65Updated this week
• althonos / lightmotif
  A lightweight platform-accelerated library for biological motif scanning using position weight matrices.
  ☆42Updated last month
• nf-core / proteinfold
  Protein 3D structure prediction pipeline
  ☆68Updated this week
• cusbg / traveler
  Template-based RNA secondary structure visualization
  ☆25Updated last month
• althonos / rich-msa
  A Rich renderable for viewing Multiple Sequence Alignments in the terminal.
  ☆78Updated 2 years ago
• gpp-rnd / rs3
  Package to Score Sequences using Rule Set 3
  ☆11Updated 10 months ago
• gladstone-institutes / Interactive-Enrichment-Analysis
  A set of Shiny apps to provide interactive enrichment analysis and exploration of results.
  ☆28Updated this week
• santiago1234 / iCodon
  iCodon customizes gene expression based on the codon composition
  ☆14Updated last year
• Edinburgh-Genome-Foundry / Geneblocks
  Find common blocks and differences between DNA sequences
  ☆40Updated 2 years ago
• mingyi-wang / somatic-combiner
  ☆10Updated 4 years ago
• kundajelab / simdna
  A python library for creating simulated regulatory DNA sequences
  ☆38Updated last year
• ialbert / bio
  Making bioinformatics fun again
  ☆63Updated 7 months ago
• bigbio / ibaqpy
  Absolute quantification package based on quantms.io
  ☆11Updated this week
• jrjhealey / bioinfo-tools
  Just a collection of (often poor) scripts to do various bits of bioinformatics stuff I find myself needing to do.
  ☆56Updated 4 years ago
• Kuanhao-Chao / splam
  ✂️ Deep learning-based splice site predictor that improves spliced alignments
  ☆41Updated this week
• brineylab / grp-paper
  Code and data used in The Great Repertoire Project
  ☆29Updated 3 years ago
• nf-core / mhcquant
  Identify and quantify MHC eluted peptides from mass spectrometry raw data
  ☆33Updated this week
• lehner-lab / DiMSum
  An error model and pipeline for analyzing deep mutational scanning (DMS) data and diagnosing common experimental pathologies
  ☆29Updated last month
• GfellerLab / PRIME
  PRedictor of IMmunogenic Epitopes
  ☆17Updated 8 months ago