Alternatives and similar repositories for epitopeprediction

Users that are interested in epitopeprediction are comparing it to the libraries listed below

• nf-core / mhcquant
  Identify and quantify MHC eluted peptides from mass spectrometry raw data
  ☆39Updated this week
• dincarnato / RNAFramework
  RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis
  ☆42Updated this week
• multimeric / Unipressed
  Comprehensive Python client for the Uniprot REST API
  ☆52Updated 3 weeks ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆45Updated 2 years ago
• ag-warscheid / autoprot
  autoprot provides standardised, fast, and reliable proteomics data analysis while ensuring a high customisability needed to tailor the an…
  ☆10Updated last week
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆28Updated 8 months ago
• labomics / MetaLogo
  MetaLogo: a heterogeneity-aware sequence logo generator and aligner
  ☆21Updated 2 years ago
• AnimaTardeb / G4Hunter
  G4Hunter (2012_2015)- IECB - Bordeaux
  ☆16Updated 5 years ago
• GfellerLab / PRIME
  PRedictor of IMmunogenic Epitopes
  ☆24Updated last month
• ebi-uniprot / ProtVista
  A BioJS viewer for protein sequence features
  ☆51Updated 2 years ago
• santiago1234 / iCodon
  iCodon customizes gene expression based on the codon composition
  ☆15Updated 2 years ago
• biosustain / snakemake_UmetaFlow
  Untargeted metabolomics workflow for large-scale data processing and analysis implemented in Snakemake
  ☆27Updated 9 months ago
• bigbio / ibaqpy
  Absolute quantification package based on quantms.io
  ☆16Updated last month
• Edinburgh-Genome-Foundry / python_codon_tables
  Codon usage tables in code-friendly format + Python bindings
  ☆39Updated 5 months ago
• GfellerLab / MixMHCpred
  HLA-I ligand predictor
  ☆43Updated last month
• mariodosreis / tai
  The tRNA adaptation index
  ☆18Updated 6 months ago
• nf-core / metaboigniter
  Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.
  ☆23Updated 4 months ago
• bcgsc / ntEmbd
  Deep learning embedding for nucleotide sequences
  ☆19Updated 7 months ago
• psathyrella / partis
  B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction
  ☆60Updated last week
• dosorio / Peptides
  An R package to calculate indices and theoretical physicochemical properties of peptides and protein sequences.
  ☆92Updated last year
• althonos / rich-msa
  A Rich renderable for viewing Multiple Sequence Alignments in the terminal.
  ☆85Updated 3 years ago
• FowlerLab / Enrich2
  Tool for deep mutational scanning experiments.
  ☆54Updated 7 months ago
• jbloomlab / dms_tools2
  software for the analysis and visualization of deep mutational scanning data
  ☆34Updated 3 years ago
• Benjamin-Lee / CodonAdaptationIndex
  Python Implementation of Codon Adaption Index
  ☆37Updated 2 years ago
• pachterlab / gget_examples
  Examples for gget (https://github.com/pachterlab/gget).
  ☆38Updated last month
• GreiffLab / immuneSIM
  ☆38Updated last year
• CapraLab / cosmis
  COSMIS is a framework for quantifying the mutational constraint on amino acid sites in 3D spatial neighborhoods. The framework currently …
  ☆17Updated 2 years ago
• nf-core / diaproteomics
  Automated quantitative analysis of DIA proteomics mass spectrometry measurements.
  ☆19Updated 9 months ago
• IEDB / PEPMatch
  ☆22Updated this week
• r2dt-bio / R2DT
  Visualise RNA secondary structure in consistent, reproducible and recognisable layouts
  ☆75Updated 3 months ago