A bioinformatics best-practice analysis pipeline for epitope prediction and annotation
☆51Mar 4, 2026Updated this week
Alternatives and similar repositories for epitopeprediction
Users that are interested in epitopeprediction are comparing it to the libraries listed below
Sorting:
- An analysis pipeline for Nanostring nCounter expression data.☆18Jan 30, 2026Updated last month
- Prediction of B-cell epitopes from amino acid sequences using deep neural networks.☆16Aug 3, 2021Updated 4 years ago
- Prediction of B-cell epitopes from amino acid sequences using deep neural networks.☆18Sep 7, 2022Updated 3 years ago
- ☆20Jun 10, 2024Updated last year
- Target prediction☆13May 8, 2020Updated 5 years ago
- Python package and command line tool for epitope prediction☆52Aug 2, 2024Updated last year
- nf-core/references is a bioinformatics pipeline that build references, for multiple use cases☆19Jan 15, 2026Updated last month
- Set of useful HADDOCK utility scripts☆57Sep 19, 2025Updated 5 months ago
- Analysis pipeline to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and …☆20Feb 18, 2026Updated 2 weeks ago
- COVID-19 Drug Design using Generative RNN-LSTM☆14Sep 14, 2020Updated 5 years ago
- Python-based framework for computational immunomics☆15Jan 11, 2024Updated 2 years ago
- cime public repository☆32Jan 12, 2023Updated 3 years ago
- Experimental plugin to integrate GPT like prompt into Nextflow☆17Apr 15, 2024Updated last year
- Precision HLA typing from next-generation sequencing data☆79Feb 27, 2026Updated last week
- pKa estimates for proteins using an ensemble approach☆29Jul 11, 2025Updated 7 months ago
- Automated quantitative analysis of DIA proteomics mass spectrometry measurements.☆21Jan 13, 2025Updated last year
- RNA-seq analysis pipeline for detection of gene-fusions☆171Feb 10, 2026Updated 3 weeks ago
- iFeatureOmega is a comprehensive platform for generating, analyzing and visualizing more than 170 representations for biological sequence…☆32Aug 16, 2023Updated 2 years ago
- ☆20May 20, 2021Updated 4 years ago
- Nascent Transcription Processing Pipeline☆22Nov 20, 2025Updated 3 months ago
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆34Apr 4, 2025Updated 11 months ago
- Material to run the HADDOCK antibody-antigen modelling protocol☆23Feb 3, 2026Updated last month
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Jan 15, 2023Updated 3 years ago
- Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.☆25Jun 26, 2025Updated 8 months ago
- Identify and quantify MHC eluted peptides from mass spectrometry raw data☆44Feb 27, 2026Updated last week
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆74Feb 27, 2026Updated last week
- This repository contains code for the paper: "Tertiary motifs as building blocks for the design of protein-binding peptides"☆21Jan 15, 2024Updated 2 years ago
- Analyses for "State of the field in multi-omics research: from computational needs to data mining and sharing"☆28Jul 6, 2023Updated 2 years ago
- ☆10Apr 22, 2019Updated 6 years ago
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆24Nov 20, 2025Updated 3 months ago
- Pre-processing of mass spectrometry-based metabolomics data with quantification and identification based on MS1 and MS2 data.☆25Jun 3, 2025Updated 9 months ago
- flexible CDR based distance metrics☆71Dec 16, 2025Updated 2 months ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Jul 13, 2021Updated 4 years ago
- Peptide library design☆23Sep 8, 2020Updated 5 years ago
- p-IgGen: A Generative Paired Antibody Language Model☆13May 6, 2025Updated 10 months ago
- ☆13Nov 29, 2024Updated last year
- This repository is the used for teaching the Physical Chemistry Practicum about Molecular Dynamics (MD) simulations for pharmacy and biol…☆12May 7, 2025Updated 10 months ago
- The Dinucleotide Quantification Python Package☆11Mar 12, 2022Updated 3 years ago
- A Python wrapper for alvaDesc software☆10Oct 15, 2024Updated last year