Alternatives and similar repositories for bcr-repertoire-papers

Users that are interested in bcr-repertoire-papers are comparing it to the libraries listed below

• xinyu-dev / igblast
  Detailed explanation on how to setup database for NCBI IgBlast executable, and using it in Python
  ☆30Updated 3 years ago
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆45Updated 2 years ago
• brineylab / grp-paper
  Code and data used in The Great Repertoire Project
  ☆29Updated 4 years ago
• wukevin / tcr-bert
  Large language modeling applied to T-cell receptor (TCR) sequences.
  ☆57Updated 3 years ago
• Genentech / Absolve
  Absolve antibody variable domain sequence analysis
  ☆18Updated 7 years ago
• uio-bmi / immuneML
  immuneML is a platform for machine learning analysis of adaptive immune receptor repertoire data.
  ☆71Updated last week
• crowelab / PyIR
  Immunoglobulin and T-Cell receptor rearrangement software
  ☆50Updated last year
• antigenomics / tcren-ms
  📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential
  ☆23Updated last month
• IdoSpringer / ERGO-II
  ERGO-II, an updated version of ERGO including more features for TCR-peptide binding prediction
  ☆34Updated 3 years ago
• chenhcs / FRoGS
  Functional Embedding of Gene Signatures
  ☆47Updated last year
• frankligy / DeepImmuno
  Deep-learning empowered prediction and generation of immunogenic epitopes for T cell immunity
  ☆73Updated 2 years ago
• ntranoslab / esm-variants
  ☆80Updated 2 years ago
• statbiophys / soNNia
  ☆17Updated last month
• autosome-ru / LegNet
  accurate prediction of promoter activity and variant effects from massive parallel reporter assays
  ☆42Updated 4 months ago
• epigen / KPNN
  Knowledge-primed neural networks
  ☆38Updated 2 years ago
• 1edv / evolution
  This repository contains the code for our manuscript - 'The evolution, evolvability, and engineering gene regulatory DNA'
  ☆96Updated 2 years ago
• svalkiers / clusTCR
  CDR3 clustering module providing a new method for fast and accurate clustering of large data sets of CDR3 amino acid sequences, and offer…
  ☆54Updated last year
• KarchinLab / bigmhc
  BigMHC predicts MHC-I (neo)epitope presentation and immunogenicity
  ☆56Updated last year
• phbradley / TCRdock
  python tools for TCR:peptide-MHC modeling and analysis
  ☆82Updated last year
• PaccMann / TITAN
  Code for "T Cell Receptor Specificity Prediction with Bimodal Attention Networks" (https://doi.org/10.1093/bioinformatics/btab294, ISMB 2…
  ☆30Updated 3 months ago
• mnielLab / NetTCR-2.0
  NetTCR-2.0. Sequence-based prediction of peptide-TCR binding
  ☆36Updated 3 years ago
• sidhomj / DeepTCR
  Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data
  ☆120Updated last month
• johli / scrambler
  Interpretation by Deep Generative Masking for Biological Sequences
  ☆37Updated 3 years ago
• pjsample / human_5utr_modeling
  Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
  ☆53Updated 6 years ago
• brianhie / evolocity
  Evolutionary velocity with protein language models
  ☆94Updated 2 years ago
• GreiffLab / immuneSIM
  ☆38Updated last year
• evanpeikon / Evaluating_ML_Biology
  A biotechnologist's guide to evaluating machine learning algorithms, with practical Python examples
  ☆21Updated 9 months ago
• JamieHeather / stitchr
  Stitchr - a Python script to stitch together coding TCR nucleotide sequences from V, J, and CDR3 info
  ☆59Updated 2 months ago
• crazyhottommy / Machine_learning_drug_discovery
  ☆27Updated 7 months ago
• openvax / mhctools
  Python interface to running command-line and web-based MHC binding predictors
  ☆99Updated last year