Analysis pipeline to detect germline or somatic variants (pre-processing, variant calling and annotation) from WGS / targeted sequencing
☆616Nov 1, 2026Updated this week
Alternatives and similar repositories for sarek
Users that are interested in sarek are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- RNA sequencing analysis pipeline using STAR, RSEM, HISAT2 or Salmon with gene/isoform counts and extensive quality control.☆1,403Updated this week
- RNA-seq analysis pipeline for detection of gene-fusions☆176Updated this week
- Call and score variants from WGS/WES of rare disease patients.☆126Updated this week
- Nanopore demultiplexing, QC and alignment pipeline☆232Updated this week
- Test data to be used for automated testing with the nf-core pipelines☆163Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- Pipeline to fetch metadata and raw FastQ files from public databases☆202Updated this week
- Aggregate results from bioinformatics analyses across many samples into a single report.☆1,497Updated this week
- A workflow language for data-driven computational pipelines☆3,521Updated this week
- Repository to host tool-specific module files for the Nextflow DSL2 community!☆434Updated this week
- ASCAT R package☆205Feb 12, 2026Updated 8 months ago
- fast BAM/CRAM depth calculation for WGS, exome, or targeted sequencing☆878May 2, 2026Updated 5 months ago
- Python package with helper tools for the nf-core community.☆329Updated this week
- gatk4 RNA variant calling pipeline