Alternatives and similar repositories for HLAGuessr:

Users that are interested in HLAGuessr are comparing it to the libraries listed below

• matsengrp / sumrep
  Summary statistics for repertoires
  ☆16Updated last year
• de-Boer-Lab / MAUDE
  Mean Alterations Using Discrete Expression
  ☆14Updated 9 months ago
• pachterlab / RMEJLBASBMP_2024
  Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"
  ☆18Updated this week
• sigven / oncoEnrichR
  Explore the cancer relevance of your gene list
  ☆49Updated 4 months ago
• slowkow / hlabud
  🐶 hlabud: HLA genotype analysis in R
  ☆16Updated 7 months ago
• kuijjerlab / PySNAIL
  Smooth-quantile Normalization Adaptation for Inference of co-expression Links
  ☆16Updated last year
• jacobhepkema / scover
  scover
  ☆22Updated last year
• songlab-cal / scquint
  ☆15Updated 8 months ago
• mikelove / zinbwave-deseq2
  Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq
  ☆31Updated 4 years ago
• icbi-lab / NeoFuse
  NeoFuse is a user-friendly pipeline for the prediction of fusion neoantigens from tumor RNA-seq data.
  ☆18Updated 2 years ago
• mandricigor / imrep
  ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.
  ☆28Updated 5 years ago
• DeplanckeLab / ChromatinHD
  High-definition modeling of chromatin + transcriptomics data
  ☆21Updated 2 months ago
• BorchLab / Ibex
  Using BCR and expression for sequence embedding
  ☆19Updated last month
• broadinstitute / mix_seq_ms
  Code associated with MIX-seq manuscript
  ☆14Updated 4 years ago
• thomsonlab / popalign
  ☆11Updated 3 years ago
• Teichlab / cell2tcr
  Inference of TCR motifs
  ☆28Updated this week
• pwwang / immunopipe
  Integrative analysis for scTCR- and scRNA-seq data
  ☆14Updated last month
• edsgard / scphaser
  R package for haplotype phasing using single-cell RNA-seq data
  ☆13Updated 7 years ago
• Vivianstats / scINSIGHT
  Matrix factorization model for interpreting single cell gene expression in biologically heterogeneous data
  ☆20Updated 10 months ago
• liulab-dfci / lisa
  epigenome analysis to rank transcription factors
  ☆13Updated 5 years ago
• vanallenlab / retained-intron-neoantigen-pipeline
  Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.
  ☆28Updated 3 years ago
• satijalab / scChromHMM
  🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…
  ☆26Updated 3 years ago
• wwylab / DeMixT
  ☆35Updated 6 months ago
• eudoraleer / scasa
  SCASA: Single cell transcript quantification tool
  ☆20Updated last year
• HelenaLC / muscat-comparison
  ☆12Updated 8 months ago
• PoolLab / ReferenceEnhancer
  ☆20Updated last year
• brianhie / trajectorama
  Multi-study integration of cellular trajectories
  ☆18Updated 4 years ago
• maxwellsh / DIGDriver
  Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.
  ☆24Updated 2 years ago
• klarman-cell-observatory / perturbseq
  Perturb-seq analysis package
  ☆14Updated 8 months ago
• csoneson / rna_velocity_quant
  Evaluation of the effect of quantification choices on RNA velocity estimates
  ☆27Updated 3 years ago