statbiophys / HLAGuessr
☆16Updated last month
Related projects ⓘ
Alternatives and complementary repositories for HLAGuessr
- Summary statistics for repertoires☆16Updated last year
- Explore the cancer relevance of your gene list☆49Updated 2 months ago
- 🐶 hlabud: HLA genotype analysis in R☆16Updated 5 months ago
- Repository for the paper "The impact of package selection and versioning on single-cell RNA-seq analysis"☆18Updated 5 months ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 3 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- Workflow for ZINB-WaVE + DESeq2 intergration for single-cell RNA-seq☆30Updated 3 years ago
- Perturb-seq analysis package☆14Updated 6 months ago
- Isoform-level expression patterns in single-cell RNA-sequencing data☆11Updated last year
- R package for haplotype phasing using single-cell RNA-seq data☆13Updated 7 years ago
- Flexible and efficient tests for evidence of positive selection anywhere in the cancer genome.☆24Updated 2 years ago
- Detecting somatic mutations and predicting tumor-specific neo-antigens☆28Updated 3 years ago
- Mean Alterations Using Discrete Expression☆13Updated 7 months ago
- ☆17Updated 6 months ago
- High-definition modeling of chromatin + transcriptomics data☆18Updated 2 weeks ago
- 🧬 🦀 A fast and efficient tool to perform a genome wide Single cell Chromatin State Analysis using multimodal histone modification data.…☆24Updated 3 years ago
- Bioinformatics for Benched Biologists☆22Updated 4 years ago
- Pipeline to detect HLA disruption from WES and RNAseq data☆15Updated last month
- Genomic trajectories (pseudotimes) in the presence of heterogenous environmental and genetic backgrounds☆10Updated 5 years ago
- Methods to use SNPs or gene expression to classify single cell RNAseq to reference profiles☆27Updated 4 years ago
- Annotation of mutated peptide sequences with published or novel potential neoantigen descriptors☆27Updated 3 months ago
- ☆19Updated 7 years ago
- Smooth-quantile Normalization Adaptation for Inference of co-expression Links☆16Updated last year
- Using BCR and expression for sequence embedding☆19Updated 3 weeks ago
- functions and algorithms for single cell RNA-seq analyses☆12Updated 3 years ago
- scpca-nf is the Nextflow workflow for processing Single-cell Pediatric Cancer Atlas Portal data☆13Updated 2 weeks ago
- epigenome analysis to rank transcription factors☆13Updated 4 years ago
- scover☆22Updated last year
- Causal inference, differential expression, and co-expression for scRNA-seq☆18Updated 3 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆28Updated 3 months ago