slowkow / awesome-vdjLinks
π Tools and databases for analyzing HLA and VDJ genes.
β234Updated 2 months ago
Alternatives and similar repositories for awesome-vdj
Users that are interested in awesome-vdj are comparing it to the libraries listed below
Sorting:
- T/B cell receptor sequencing analysis notesβ271Updated last year
- Grouping of Lymphocyte Interactions by Paratope Hotspotsβ96Updated 5 years ago
- Cell type specific enhancer-gene predictions using ABC model (Fulco, Nasser et al, Nature Genetics 2019)β243Updated 6 months ago
- Single sample Gene Set Enrichment analysis (ssGSEA) and PTM Enrichment Analysis (PTM-SEA)β303Updated 2 months ago
- Benchmarking computational single cell ATAC-seq methodsβ184Updated 5 years ago
- TCR and BCR assembly from RNA-seq dataβ337Updated last week
- kallisto | bustools workflow for pre-processing single-cell RNA-seq dataβ118Updated 3 years ago
- A scanpy extension to analyse single-cell TCR and BCR data.β242Updated last week
- Python package to perform enrichment analysis from omics data.β245Updated last week
- Single-cell Transcriptome and Regulome Analysis Pipelineβ297Updated 2 years ago
- A tool for detecting somatic variants in single cell dataβ215Updated last year
- A wrapper for the kallisto | bustools workflow for single-cell RNA-seq pre-processingβ182Updated 2 months ago
- Single cell RNA sequencing analysis courseβ229Updated last month
- Cell types enrichment analysisβ205Updated last year
- ποΈ [vdjdb.cdr3.net server will undergo maintenance this December, web site may be unreachable!] Git-based TCR database storage & managemβ¦β149Updated this week
- A complete guide for analyzing bulk RNA-seq data. Go from raw FASTQ files to mapping reads using STAR and differential gene expression anβ¦β112Updated 5 years ago
- R package to access DoRothEA's regulonsβ152Updated last year
- Panoramic stitching of single cell dataβ293Updated 5 months ago
- Batch effect adjustment based on negative binomial regression for RNA sequencing count dataβ200Updated 5 years ago
- my notes for scATACseq analysisβ133Updated last year
- Simple simulation of single-cell RNA sequencing dataβ232Updated 2 weeks ago
- Bias factorized, base-resolution deep learning models of chromatin accessibility (chromBPNet)β196Updated 3 months ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package for 10X Chromium 5' dataβ122Updated last week
- [Deprecated, see https://github.com/antigenomics/mirpy and other tools @antigenomics] Post-analysis of immune repertoire sequencing dataβ142Updated last year
- What you need to process the Quarterly DepMap-Omics releases from Terraβ125Updated 3 months ago
- A toolkit for single-cell immune profilingβ356Updated 3 weeks ago
- Code and annotations for the Tabula Muris single-cell transcriptomic dataset.β194Updated 2 years ago
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)β86Updated 4 years ago
- A (continuously updated) collection of references to Hi-C data. Predominantly human/mouse Hi-C data, with replicates.β201Updated last week
- Bench-marking classification tools for scRNA-seq dataβ189Updated 3 years ago