mskcc / facets-suiteLinks
Utility functions for FACETS
☆39Updated 3 weeks ago
Alternatives and similar repositories for facets-suite
Users that are interested in facets-suite are comparing it to the libraries listed below
Sorting:
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- DriverPower☆26Updated 10 months ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated 2 years ago
- An R package for predicting HR deficiency from mutation contexts☆30Updated 9 months ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 4 years ago
- ☆13Updated 8 years ago
- Flexible Bayesian inference of mutational signatures☆37Updated 2 years ago
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Updated 3 years ago
- ☆38Updated 4 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆18Updated 5 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 5 years ago
- Quantifying copy number signatures from absolute copy number profiles☆26Updated 3 months ago
- An R package to time somatic mutations☆64Updated 4 years ago
- CNV analysis workflow code for the manuscript☆13Updated 5 years ago
- A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data☆16Updated 5 years ago
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- R package wrapping bedtools☆44Updated 8 months ago
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/annotatr.html Bug Reports: https://support.bioconductor.org/p/new/post…☆27Updated last month
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆41Updated last year
- DRAGEN Tumor/Normal workflow post-processing☆23Updated 2 years ago
- ☆33Updated 3 years ago
- workshop website on readthedocs☆21Updated last month
- Tool for analyzing the inter-mutational distances between SNV-SNV and INDEL-INDEL mutations. Tool separates mutations into clustered and …☆13Updated 3 months ago
- A collection of modules to process and analyze IMGT-HLA sequences.☆28Updated 2 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 6 years ago
- Algorithm for detecting alternative splicing in a population of single cells. See details in Welch et al., Nucleic Acids Research 2016: h…☆22Updated 9 years ago
- GTEx analysis scripts☆20Updated 8 years ago
- ☆26Updated last year