mskcc / facets-suiteLinks
Utility functions for FACETS
☆37Updated last year
Alternatives and similar repositories for facets-suite
Users that are interested in facets-suite are comparing it to the libraries listed below
Sorting:
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆71Updated last year
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆31Updated last year
- DriverPower☆26Updated 5 months ago
- Quantifying copy number signatures from absolute copy number profiles☆24Updated last week
- Flexible Bayesian inference of mutational signatures☆35Updated 2 years ago
- ☆13Updated 7 years ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated last year
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆36Updated 3 years ago
- R package for applying Gamma-Poisson regression to identify statistical enrichment or depletion of somatic mutations in regions after cor…☆30Updated 2 years ago
- ☆33Updated 3 years ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 4 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- An R package for predicting HR deficiency from mutation contexts☆28Updated 5 months ago
- CNV analysis workflow code for the manuscript☆13Updated 5 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆17Updated 5 years ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- An R package to time somatic mutations☆62Updated 4 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 5 years ago
- EBI cancer workshop course materials☆20Updated 3 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated 2 years ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- Single Cell Analysis Automated Workflow☆27Updated 2 years ago
- R package wrapping bedtools☆41Updated 3 months ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 3 months ago
- Codes and Data for FFPEsig manuscript☆17Updated last year
- Conveniently perform ASCAT copy-number analysis from Tumor-Normal or Tumor only BAM files in R☆11Updated 3 years ago
- CNAqc - Copy Number Alteration (CNA) Quality Check package☆22Updated last month
- novoBreak: local assembly for breakpoint detection in cancer genomes☆26Updated 7 years ago