mskcc / facets-suite
Utility functions for FACETS
☆34Updated 11 months ago
Alternatives and similar repositories for facets-suite:
Users that are interested in facets-suite are comparing it to the libraries listed below
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆30Updated last year
- ☆13Updated 7 years ago
- Main repository for Drews et al. (Nature, 2022)☆39Updated last year
- DriverPower☆26Updated last month
- An R package for predicting HR deficiency from mutation contexts☆28Updated 2 weeks ago
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆70Updated 9 months ago
- This method uses shallow Whole Genome Sequencing (sWGS) and the segmentation of a genomic profile to assess the Homologous Recombination …☆33Updated 7 months ago
- Filtering of PDX samples for mouse derived reads☆26Updated 2 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 5 years ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆19Updated 5 years ago
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 5 years ago
- Quantifying copy number signatures from absolute copy number profiles☆23Updated this week
- A multi-method comparative bioinformatics pipeline to detect and study circRNAs from RNA-seq data☆14Updated 4 years ago
- QDNAseq bin annotation for hg38☆14Updated 2 years ago
- Clonality inference in multiple tumor samples using phylogeny☆13Updated 7 years ago
- Rocking R at UMCCR☆9Updated 4 years ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 4 months ago
- Flexible Bayesian inference of mutational signatures☆34Updated 2 years ago
- ☆23Updated 6 months ago
- RNA editing tests☆16Updated 4 years ago
- Full-spectrum copy number variation detection by high-throughput DNA sequencing☆37Updated 3 years ago
- A set of tools to annotate VCF files with expression and readcount data☆29Updated 5 months ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 3 years ago
- Codes and Data for FFPEsig manuscript☆15Updated last year
- Genomic Association Tester☆30Updated last year
- Advanced plotting functions for CNV data generated by CNV-Seq and Control Freec☆13Updated 4 years ago
- ☆34Updated 5 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆29Updated 5 years ago
- Filter and prioritize fusion calls☆20Updated 5 months ago
- CNV analysis workflow code for the manuscript☆13Updated 4 years ago