mskcc / facets-suiteLinks
Utility functions for FACETS
☆39Updated 2 months ago
Alternatives and similar repositories for facets-suite
Users that are interested in facets-suite are comparing it to the libraries listed below
Sorting:
- An R package for studying mutational signatures and structural variant signatures along clonal evolution in cancer.☆72Updated last year
- ☆13Updated 8 years ago
- DriverPower☆26Updated last year
- A tool kit for dissecting cancer evolution from multi-region derived tumor biopsies via somatic mutations☆35Updated 3 years ago
- Fork from https://bitbucket.org/mcgranahanlab/lohhla/src, modified for MSKCC needs☆32Updated 2 years ago
- An R package for predicting HR deficiency from mutation contexts☆30Updated 11 months ago
- Main repository for Drews et al. (Nature, 2022)☆42Updated 2 years ago
- Flexible Bayesian inference of mutational signatures☆38Updated 2 years ago
- Create mutation signatures from MAF's, and decompose them into Stratton signatures☆60Updated 6 years ago
- CNV analysis workflow code for the manuscript☆13Updated 5 years ago
- ☆39Updated 4 years ago
- An R package to time somatic mutations☆65Updated 5 years ago
- R package for applying Gamma-Poisson regression to identify statistical enrichment or depletion of somatic mutations in regions after cor…☆31Updated 2 months ago
- CNApp represents the first web tool to perform a comprehensive and integrative analysis of copy number alterations (CNAs) in a user-frien…☆20Updated 6 years ago
- Model-based tumour subclonal deconvolution using population genetics☆33Updated last month
- Filters for false-positive mutation calls in NGS☆34Updated 6 years ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆18Updated 5 years ago
- a parallel R package for detecting copy-number alterations from short sequencing reads☆23Updated 4 years ago
- ☆36Updated 6 years ago
- DRAGEN Tumor/Normal workflow post-processing☆25Updated 2 years ago
- A neoantigen calling pipeline begins from variants record file (MAF) (Not maintain now)☆30Updated 6 years ago
- Quantifying copy number signatures from absolute copy number profiles☆26Updated 5 months ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆42Updated last year
- Clonal and subclonal Copy Number Alteration quality check integrating somatic mutation☆24Updated 3 months ago
- Dirichlet Process based methods for subclonal reconstruction of tumours☆31Updated 9 months ago
- Disambiguation algorithm for reads aligned to human and mouse genomes using Tophat or BWA mem☆31Updated 7 years ago
- cDriver R package for finding candidate driver genes in cancers☆18Updated 8 years ago
- Filtering of PDX samples for mouse derived reads☆28Updated last week
- Comprehensive genome-wide visualization of absolute copy number and copy neutral variations☆29Updated 6 years ago
- ☆17Updated 7 years ago