An analysis pipeline for Nanostring nCounter expression data.
☆18Sep 1, 2026Updated this week
Alternatives and similar repositories for nanostring
Users that are interested in nanostring are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Analysis pipeline to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and …☆22Updated this week
- Analysis pipeline for the identification of viral integration events in genomes using a chimeric read approach.☆19Jul 28, 2026Updated last month
- A bioinformatics best-practice analysis pipeline for epitope prediction and annotation☆56Updated this week
- Experimental plugin to integrate GPT like prompt into Nextflow☆17Apr 15, 2024Updated 2 years ago
- Genome annotation with PacBio Iso-Seq. Takes raw subreads as input, generate Full Length Non Chemiric (FLNC) sequences and produce a bed …☆56Updated this week
- Proton VPN Special Offer - Get 70% off • AdSpecial partner offer. Trusted by over 100 million users worldwide. Tested, Approved and Recommended by Experts.
- Pipeline to generate variant catalogues, a list of variants and their frequencies in a population, from whole genome sequences.☆13Jul 28, 2026Updated last month
- Nascent Transcription Processing Pipeline☆25Updated this week
- Recommendations to contenarized your bioinformatics software☆12May 30, 2018Updated 8 years ago
- rawr package☆17Jul 29, 2026Updated last month
- CAGE-sequencing analysis pipeline with trimming, alignment and counting of CAGE tags.☆11Updated this week
- Repository for custom module scripts for SMIDA☆14May 19, 2025Updated last year
- gatk4 RNA variant calling pipeline☆61Updated this week
- Tools for NanoString GeoMx Digital Spatial Profiler data for reading DCC and PKC files to NanoStringGeomxSet class, Normalization and QC.…☆49Sep 29, 2025Updated 11 months ago
- Build and deploy Singularity containers to GitHub releases, and pull with the singularity-hpc client☆17Oct 12, 2023Updated 2 years ago
- GPU virtual machines on DigitalOcean Gradient AI • AdGet to production fast with high-performance AMD and NVIDIA GPUs you can spin up in seconds. The definition of operational simplicity.
- A small-RNA sequencing analysis pipeline☆101Updated this week
- Pipeline for processing spatially-resolved gene counts with spatial coordinates and image data. Designed for 10x Genomics Visium transcri…☆81Updated this week
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆68Updated this week
- Precision HLA typing from next-generation sequencing data☆81Updated this week
- To reveal the cellular heterogeneity within flow cytometry data, clustering and pseudotime analysis can be performed. Here, we demonstrat…☆14Jul 5, 2022Updated 4 years ago
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆29Updated this week
- A tool for simulating CNVs for WES data. It simulates rearranged genome(s), short reads (fastq) and BAM file(s) automatically in one sing…☆17Feb 21, 2020Updated 6 years ago
- ☆14Feb 19, 2024Updated 2 years ago
- CLIP sequencing analysis pipeline for QC, pre-mapping, genome mapping, UMI deduplication, and multiple peak-calling options.☆25Jul 28, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- UNDER DEVELOPMENT--- Analysis of long non-coding RNAs from RNA-seq datasets☆34Jul 28, 2026Updated last month
- A pipeline to investigate horizontal gene transfer from NGS data☆27Updated this week
- A pipeline to identify (and remove) certain sequences from raw genomic data. Default taxon to identify (and remove) is Homo sapiens. Remo…☆24Updated this week
- Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.☆25Jul 28, 2026Updated last month
- Python-based framework for computational immunomics☆15Jun 11, 2026Updated 2 months ago
- nf-core/references is a bioinformatics pipeline that build references, for multiple use cases☆22Updated this week
- Analysis of Chromosome Conformation Capture data (Hi-C)☆112Updated this week
- Nanopore demultiplexing, QC and alignment pipeline☆228Updated this week
- Time-resolved single-cell transcriptomics (Zman-seq)☆12Apr 9, 2025Updated last year
- Managed Database hosting by DigitalOcean • AdPostgreSQL, MySQL, MongoDB, Kafka, Valkey, and OpenSearch available. Automatically scale up storage and focus on building your apps.
- This repository contains the code developed for the NanOlympicsMod project.☆12Jan 29, 2024Updated 2 years ago
- Direct RNA publication scripts☆11Sep 20, 2017Updated 8 years ago
- A library for manipulating bioinformatics sequencing formats in Apache Spark☆35May 6, 2026Updated 3 months ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆81Aug 28, 2026Updated last week
- Package Homepage: http://bioconductor.org/packages/devel/bioc/html/DRIMSeq.html Bug Reports: https://support.bioconductor.org/p/new/post/…☆14Aug 5, 2020Updated 6 years ago
- Data Science Operations (dso) command line tool☆48Jun 15, 2026Updated 2 months ago
- Converts bam or cram files to fastq format and does quality control.☆32Updated this week