nf-core / configsLinks
Config files used to define parameters specific to compute environments at different Institutions
☆104Updated this week
Alternatives and similar repositories for configs
Users that are interested in configs are comparing it to the libraries listed below
Sorting:
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆82Updated this week
- A small-RNA sequencing analysis pipeline☆94Updated 4 months ago
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆87Updated last week
- Sequana: a set of Snakemake NGS pipelines☆146Updated 2 months ago
- Demonstrating best practices for bioinformatics command line tools☆116Updated 5 years ago
- Test data to be used for automated testing with the nf-core pipelines☆140Updated this week
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆88Updated 11 months ago
- A simple RNA-Seq differential gene expression pipeline using Nextflow☆100Updated 2 months ago
- Tips for Nextflow and cheatsheet for channel operation☆80Updated last year
- Tip and tricks for BAM files☆86Updated 7 years ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆66Updated 3 weeks ago
- Frequently used commands in bioinformatics☆56Updated 11 months ago
- Nextflow training material for introductory tutorial☆107Updated 3 years ago
- Documentation and description of AWS iGenomes S3 resource.☆116Updated 10 months ago
- Precision HLA typing from next-generation sequencing data☆72Updated 2 months ago
- Nextflow pipeline for analysis of direct RNA Nanopore reads☆108Updated 3 months ago
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- A C++ drop-in replacement of FastQC to assess the quality of sequence read data☆118Updated last month
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆88Updated 2 months ago
- Demultiplexing pipeline for sequencing data☆51Updated 3 weeks ago
- Learning the Variant Call Format☆144Updated 2 months ago
- gatk4 RNA variant calling pipeline☆54Updated 2 weeks ago
- The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…☆47Updated 2 years ago
- A utility for easy downloading of reads from next-gen sequencing repositories like NCBI SRA☆107Updated last month
- ☆123Updated 2 months ago
- Nextflow RNA-Seq Best Practice analysis pipeline, used at the SciLifeLab National Genomics Infrastructure.☆51Updated 7 years ago
- Module for embedding igv.js in an IPython notebook☆78Updated 8 months ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆138Updated last month
- Testing building mulled containers for multi-requirement tools.☆80Updated last week
- Long read production pipelines☆148Updated last week