nf-core / configsLinks
Config files used to define parameters specific to compute environments at different Institutions
☆104Updated last week
Alternatives and similar repositories for configs
Users that are interested in configs are comparing it to the libraries listed below
Sorting:
- Differential abundance analysis for feature/ observation matrices from platforms such as RNA-seq☆84Updated this week
- A comprehensive cancer DNA/RNA analysis and reporting pipeline☆89Updated last week
- A small-RNA sequencing analysis pipeline☆94Updated 4 months ago
- Tip and tricks for BAM files☆86Updated 7 years ago
- Nanopore RNA-Seq data from the Singapore Nanopore-Expression Project☆141Updated 2 months ago
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆67Updated last week
- Analysis of Chromosome Conformation Capture data (Hi-C)☆101Updated 2 weeks ago
- A nextflow pipeline to perform state-of-the-art genome-wide association studies.☆77Updated 3 weeks ago
- HTSeq is a Python library to facilitate processing and analysis of data from high-throughput sequencing (HTS) experiments.☆106Updated 4 months ago
- A collection of scripts to assist in the retrieval of data from the ENA Browser☆88Updated 2 months ago
- JAFFA is a multi-step pipeline that takes either raw RNA-Seq reads, or pre-assembled transcripts, then searches for gene fusions☆101Updated 4 months ago
- Frequently used commands in bioinformatics☆56Updated last year
- Software for predicting library complexity and genome coverage in high-throughput sequencing.☆88Updated last year
- GATK RNA-Seq Variant Calling in Nextflow☆136Updated 2 years ago
- Precision HLA typing from next-generation sequencing data☆73Updated 2 weeks ago
- Demonstrating best practices for bioinformatics command line tools☆116Updated 5 years ago
- The Subread software package is a tool kit for processing next-gen sequencing data. It includes Subread aligner, Subjunc exon-exon juncti…☆51Updated 2 years ago
- trackplot is a tool for visualizing various next-generation sequencing (NGS) data, including DNA-seq, RNA-seq, single-cell RNA-seq and fu…☆97Updated last month
- Genomic Interactive Visualization Engine☆145Updated 2 years ago
- Documentation and description of AWS iGenomes S3 resource.☆117Updated 10 months ago
- Sequana: a set of Snakemake NGS pipelines☆148Updated 2 weeks ago
- GFF3sort: A Perl Script to sort gff3 files and produce suitable results for tabix tools☆51Updated 5 years ago
- A simple RNA-Seq differential gene expression pipeline using Nextflow☆100Updated 2 months ago
- Snakemake-based workflow for detecting structural variants in genomic data☆80Updated 8 months ago
- Test data to be used for automated testing with the nf-core pipelines☆142Updated this week
- ClairS-TO - a deep-learning method for tumor-only somatic variant calling☆70Updated 2 weeks ago
- CrossMap is a python program to lift over genome coordinates from one genome version to another.☆88Updated 4 months ago
- gatk4 RNA variant calling pipeline☆54Updated last week
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆61Updated 4 months ago
- Reference genome resource manager☆74Updated last year