repseqio / library-imgt
IMGT segment library converted to RepSeq.IO JSON format
☆13Updated last year
Related projects ⓘ
Alternatives and complementary repositories for library-imgt
- ☆46Updated 2 years ago
- V'DJer - B Cell Receptor Repertoire Reconstruction from short read mRNA-Seq data☆29Updated 2 years ago
- Toolkit for the design and analysis of amplicon sequencing experiments utilizing unique molecular identifiers (UMIs)☆41Updated 6 months ago
- MAGERI - Assemble, align and call variants for targeted genome re-sequencing with unique molecular identifiers☆21Updated 7 years ago
- ☆14Updated 2 years ago
- simplified cellranger for long-read data☆17Updated 2 months ago
- Calib clusters barcode tagged paired-end reads based on their barcode and sequence similarity.☆38Updated last year
- ☆33Updated 2 months ago
- Long read to rMATS☆31Updated last year
- Identifying differentially methylated regions from MethylC-seq (bisulfite-sequencing) data☆26Updated last year
- Pipeline to detect HLA disruption from WES and RNAseq data☆15Updated last month
- A portable, flexible, parallelized tool for complete processing of massively parallel reporter assay data☆31Updated 9 months ago
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆13Updated 2 weeks ago
- Tool package to perform in-silico CRISPR analysis and assessment☆22Updated 6 months ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆27Updated 3 years ago
- IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:☆48Updated 2 years ago
- For biological deep sequencing data. Decompose a UCSC knownGenes/Ensembl GTF file into transcript regions (i.e. exons, introns, UTRs and…☆33Updated last year
- Digenome-toolkit ver2.☆15Updated 3 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 3 years ago
- A RepSeq processing swiss-knife☆41Updated 7 months ago
- A novel PSSM based software for predicting class I peptide-HLA binding affinity☆17Updated 7 years ago
- Versatile FASTA/FASTQ demultiplexer.☆32Updated 5 months ago
- Detection of Circular RNA and Fusions from RNA-Seq☆32Updated 6 years ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9…☆20Updated 7 months ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆26Updated last year
- Decombinator v5: fast, error-correcting analysis of TCR repertoires☆22Updated this week
- RAGE-seq scripts☆18Updated 3 years ago
- The ECCsplorer is a bioinformatics pipeline for the automated detection of extrachromosomal circular DNA (eccDNA) from paired-end read da…☆18Updated 7 months ago
- Useful tools for working with Salmon output☆35Updated 4 years ago