CFIA-NCFAD / nf-fluLinks
Influenza genome analysis Nextflow workflow
☆24Updated 2 weeks ago
Alternatives and similar repositories for nf-flu
Users that are interested in nf-flu are comparing it to the libraries listed below
Sorting:
- Collection of R scripts for SARS-CoV-2 (variant) analyses☆12Updated 2 years ago
- BACTpipe: An assembly and annotation pipeline for bacterial genomics☆20Updated last year
- ☆26Updated 2 years ago
- Resolving Species Level Classification Using Emu☆14Updated last year
- Interactive, web tool for exploring pan-genome of bacterial strains☆48Updated 3 weeks ago
- Phylogenetic maximum representation sampling: choosing most representative strains or taxa☆40Updated 4 months ago
- Intra-species bacterial contamination detection☆25Updated this week
- MutTui pipeline to reconstruct mutational spectra for bacterial and viral datasets☆33Updated last year
- Spaghetti: in situ analysis of 16S rRNA amplicons obtained by nanopore sequencing☆19Updated last year
- 🍊 💫 Trim, circularise and orient long read bacterial genome assemblies☆24Updated 6 years ago
- An `R` package for various phylogenetic and evolutionary biology data manipulations☆12Updated 7 years ago
- Strain-level abundances estimation in metagenomic samples using variation graphs☆24Updated 3 years ago
- Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database☆43Updated 5 years ago
- Assembly based core genome SNP alignments for bacteria☆25Updated 6 years ago
- k-mer based Pipeline to identify the Serotype from Illumina NGS reads☆26Updated 2 years ago
- A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences☆62Updated 2 months ago
- Prokaryotic Pangenome Analysis☆24Updated 4 years ago
- Remove human reads from a sequencing run☆47Updated last month
- Get microbial sequence data easier and faster☆28Updated 6 years ago
- QA/QC pipeline for a MiSeq/HiSeq/Ion Torrent/assembly-only run☆12Updated last year
- Olivar: towards automated variant aware primer design for multiplex tiled amplicon sequencing of pathogens☆37Updated 3 weeks ago
- Mandrake 🌿/👨🔬🦆 – Fast visualisation of the population structure of pathogens using Stochastic Cluster Embedding☆39Updated 11 months ago
- Remove contaminated contigs from genomes using k-mers and taxonomies.☆59Updated 2 years ago
- Read contamination removal☆25Updated 2 years ago
- Output FASTQ summary statistics in JSON format☆29Updated 3 years ago
- A streamlined workflow and GUI for real-time species identification and pathogen characterization via nanopore sequencing data. Engineere…☆20Updated last year
- ☆14Updated 4 years ago
- Microbial Genome Circular plotting tool for comparative genomics using Circos☆39Updated 3 years ago
- Searching DNA/RNA sequence databases with PCR and/or probe queries☆22Updated last year
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆13Updated last year