Influenza genome analysis Nextflow workflow
☆28Jun 3, 2026Updated 4 months ago
Alternatives and similar repositories for nf-flu
Users that are interested in nf-flu are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- A Nextflow pipeline for viral genomics (Influenza/RSV) supporting Illumina and Nanopore sequencing of clinical and wastewater samples.☆10Jun 9, 2026Updated 4 months ago
- ☆22Jun 1, 2026Updated 4 months ago
- ☆28Aug 2, 2023Updated 3 years ago
- VIGOR4☆24Aug 15, 2025Updated last year
- FluMut is a command-line tool to find markers of interest in H5N1 avian influenza viruses.☆15Updated this week
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- Bacterial surveillance pipeline.☆30Sep 30, 2026Updated last week
- Mycobacterium tuberculosis genomic analysis from Nanopore sequencing data☆15Jun 5, 2026Updated 4 months ago
- Nextflow workflows to assign Salmonella serotype based on Genome similarity using MASH, SOURMASH and KMA.☆14Sep 29, 2026Updated last week
- Nextflow pipeline for generation of phylogenetic trees to be visualized in Auspice.☆11Jan 6, 2026Updated 9 months ago
- An SRA tool that takes as input local fastq file from a clinical infection sample, identifies and removes any significant human read, and…☆58Jul 24, 2025Updated last year
- INSaFLU-TELEVIR: an free web-based (but also locally installable) bioinformatics suite for virus metagenomic detection and routine genomi…☆44Updated this week
- CFSAN Shigella Typing Pipeline☆15Jun 11, 2026Updated 4 months ago
- Bioinformatics Pipeline and Visualization resources☆68Aug 30, 2024Updated 2 years ago
- Files and methodology pertaining to the sequencing and analysis of SARS-CoV-2, causative agent of COVID-19.☆33Apr 10, 2026Updated 6 months ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- ☆23Sep 22, 2026Updated 3 weeks ago
- Influenza data pipeline to automate genotyping assignment☆45Sep 10, 2026Updated last month
- 🦠🧬 Unraveling Viral Genomes from Metagenomes☆11Jul 30, 2026Updated 2 months ago
- SARS-CoV-2: detecting recombinations in viruses using large data sets with high sequence similarity☆13Aug 14, 2023Updated 3 years ago
- Influenza genome analysis Nextflow workflow☆33Sep 15, 2025Updated last year
- A simple nextflow pipeline for running kraken2 and bracken in a docker container☆22Oct 8, 2025Updated last year
- Experiments with using BIGSI data structure for metagenomic and QC applications☆19Aug 12, 2024Updated 2 years ago
- A simple pipeline for bacterial assembly and quality control☆17Updated this week
- Surveillance of pathogens using population genomics and sequencing☆62Updated this week
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- MycoSNP: Whole Genome Sequencing Analysis of Fungal Isolates☆96Jul 23, 2026Updated 2 months ago
- Bioinformatics workflows for genomic characterization, submission preparation, and genomic epidemiology of viral pathogens of concern, es…☆42Aug 5, 2024Updated 2 years ago
- Official place for proposals and details around monkeypox virus lineage designations☆23Jul 7, 2026Updated 3 months ago
- Extract subsets of ONT (Nanopore) reads based on time☆26Sep 12, 2024Updated 2 years ago
- TaxTriage is a Nextflow workflow designed to agnostically identify and give confidences of microbial organisms within short- or long-read…☆83Updated this week
- Python Toolkit for using containerized programs in either Singularity or Docker☆31Mar 19, 2024Updated 2 years ago
- ☆10Apr 16, 2025Updated last year
- Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.☆14Jan 6, 2023Updated 3 years ago
- Experimental plugin to integrate GPT like prompt into Nextflow☆17Apr 15, 2024Updated 2 years ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- A pipeline for comprehensive genomic analyses of Mycobacterium tuberculosis with a focus on clinical decision making as well as research☆20Aug 10, 2026Updated 2 months ago
- Viral (meta)-genome assembly pipeline.☆24Sep 8, 2026Updated last month
- A repo with just adapter sequences☆14Jul 7, 2025Updated last year
- whole genome MLST analysis☆57Jun 17, 2026Updated 3 months ago
- Interpretative standards for AMR genotypes☆32Updated this week
- LYVE-SET, a method of using hqSNPs to create a phylogeny, especially for outbreak investigations☆26Aug 26, 2024Updated 2 years ago
- Benchmark datasets for WGS analysis of SARS-CoV-2. (https://peerj.com/articles/13821/)☆61Mar 23, 2023Updated 3 years ago