Genotyping Immunoglobulin Heavy Chain Variable Genes using Short Read Data
☆12May 9, 2025Updated last year
Alternatives and similar repositories for ImmunoTyper2
Users that are interested in ImmunoTyper2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python program designed to reconstruct immunoglobulin gene rearrangements and oncogenic translocations from WGS, WES and capture NGS in l…☆21Jul 6, 2023Updated 3 years ago
- A tool for visualization of pairwise alignments of multiple sequences☆19Aug 12, 2025Updated 11 months ago
- ☆16Feb 28, 2025Updated last year
- SNP-Assisted SV Calling and Phasing Using ONT☆25Jul 9, 2023Updated 3 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆57Mar 7, 2025Updated last year
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- VEP Plugin to annotate high-impact five prime UTR variants☆30Aug 23, 2024Updated last year
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆14Apr 9, 2022Updated 4 years ago
- Parakit is a tool to analyze the RCCX module, which contain the CYP21A2 gene, using long sequencing reads.☆15Jun 29, 2026Updated last month
- ☆12May 6, 2022Updated 4 years ago
- Detect recombination hotspots using population genetic data.☆17Jun 10, 2020Updated 6 years ago
- IgSimulator is a versatile tool for simulation of immunoglobulin repertoire☆12Nov 25, 2016Updated 9 years ago
- ☆19Apr 20, 2025Updated last year
- Plot multiple sequence alignment (MSA)☆17Apr 21, 2026Updated 3 months ago
- A toolkit for exploring regions of variation in pangenomes☆15Jun 12, 2026Updated last month
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆11Dec 17, 2025Updated 7 months ago
- methylR: a single shiny solution from sequencer data to pathway analysis☆12Oct 30, 2024Updated last year
- Search for activating regulatory variants in the tumor genome☆15Apr 11, 2025Updated last year
- Hierarchical annotation of immune cells n scRNA-Seq data based on ssGSEA algorithm.☆12May 31, 2024Updated 2 years ago
- ☆19May 5, 2020Updated 6 years ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆20Oct 12, 2024Updated last year
- ☆15Dec 8, 2023Updated 2 years ago
- ☆48Jan 7, 2025Updated last year
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆78Updated this week
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Genome Assembly 102☆18Apr 23, 2025Updated last year
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆87Oct 6, 2021Updated 4 years ago
- ☆22Apr 15, 2024Updated 2 years ago
- The Arcade Learning Environment (ALE) -- a platform for AI research.☆27Jul 13, 2026Updated 3 weeks ago
- tools in python and R for analyzing biological count data, especially from single cell RNAseq☆23Feb 1, 2024Updated 2 years ago
- Rapid and accurate ancestry inference using SNVs.☆29Aug 15, 2025Updated 11 months ago
- ☆20Jun 30, 2026Updated last month
- POUTINE: a next-generation homoplasy counting method for genome-wide association studies.☆10Mar 9, 2023Updated 3 years ago
- Analysis of gene expression and splicing diversity in a subset of samples from the 1000 Genomes Project, including eQTL and sQTL discover…☆45Apr 28, 2026Updated 3 months ago
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- ☆23Updated this week
- Network-based module discovery algorithm with high rate of empirically-validated term calls☆14Oct 22, 2023Updated 2 years ago
- Data Integration tool utilizing network information for predictive analyses☆16May 15, 2025Updated last year
- A positive-unlabeled ensemble learning framework for disease gene prioritization.☆21Nov 10, 2025Updated 8 months ago
- A library and tool for accessing remote BLOW5 files.☆25Jun 3, 2026Updated 2 months ago
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆29Updated this week
- Code to reproduce analyses in Nasser, Bergman, Fulco, Guckelberger, Doughty et al Nature 2021☆18Apr 8, 2021Updated 5 years ago