algo-cancer / ImmunoTyper2Links
Genotyping Immunoglobulin Heavy Chain Variable Genes using Short Read Data
☆9Updated 3 weeks ago
Alternatives and similar repositories for ImmunoTyper2
Users that are interested in ImmunoTyper2 are comparing it to the libraries listed below
Sorting:
- Tumor Phylogeny Reconstruction via Integrative use of Single Cell and Bulk Sequencing Data☆11Updated 4 years ago
- Pairtree is a method for reconstructing cancer evolutionary history in individual patients, and analyzing intratumor genetic heterogeneit…☆37Updated last year
- ☆22Updated 5 months ago
- A tool for genotyping Variable Number Tandem Repeats (VNTR) from sequence data☆44Updated 6 months ago
- Benchmarking long-read RNA-seq analysis tools☆27Updated 3 months ago
- ☆25Updated last year
- Universal RObust Peak Annotator☆16Updated last year
- 🤖 Open‑source deep-learning-based splice‑site predictor that decodes splicing patterns across species☆19Updated last week
- Genetic Heterogeneity Profiling by Single Cell RNA Sequencing☆35Updated 5 years ago
- WES HLA Typing based on multiple alternative tools☆17Updated 4 years ago
- Single Cell Caller (SCcaller) - Identify single nucleotide variations (SNVs) from single cell sequencing data☆34Updated 6 months ago
- Location of public benchmarking; primarily final results☆18Updated 3 months ago
- ☆28Updated 5 months ago
- Polyidus provides a framework to catch chimeric DNA sequences with a tale of python☆9Updated last year
- Dirichlet Process based methods for subclonal reconstruction of tumours☆29Updated 2 months ago
- A collection of modules to process and analyze IMGT-HLA sequences.☆29Updated 2 years ago
- A p-value-free method for controlling false discovery rates in high-throughput biological data with two conditions☆39Updated 2 years ago
- A Package For Predicting The Disruptiveness Of Single Nucleotide Polymorphisms On Transcription Factor Binding Sites.☆29Updated 10 months ago
- Annotation and segmentation of MAS-seq data☆20Updated 2 years ago
- BAGEL software☆27Updated last year
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- Snakemake pipeline for microexon discovery and quantification☆20Updated 4 months ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆27Updated last year
- ☆26Updated 2 months ago
- ☆39Updated 8 months ago
- Isoform co-usage networks from single-cell RNA-seq data☆16Updated last year
- Somatic coding and non-coding mutation enrichment analysis for tumor WGS data☆11Updated 3 years ago
- Pipeline to call neoantigens from intron retention events derived from RNA-Seq data.☆28Updated 4 years ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆35Updated 11 months ago
- Comprehensive and scalable differential splicing analyses☆17Updated 2 months ago