Genotyping Immunoglobulin Heavy Chain Variable Genes using Short Read Data
☆13May 9, 2025Updated last year
Alternatives and similar repositories for ImmunoTyper2
Users that are interested in ImmunoTyper2 are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Python program designed to reconstruct immunoglobulin gene rearrangements and oncogenic translocations from WGS, WES and capture NGS in l…☆22Sep 7, 2026Updated last month
- a tool for annotation of immunoglobulin genes in genome assemblies☆15Sep 22, 2025Updated last year
- IgSimulator is a versatile tool for simulation of immunoglobulin repertoire☆12Nov 25, 2016Updated 9 years ago
- 雷 - kaminari (thunder/lightning)☆12May 4, 2026Updated 5 months ago
- A tool for visualization of pairwise alignments of multiple sequences☆19Aug 12, 2025Updated last year
- AI Agents on DigitalOcean Gradient AI Platform • AdBuild production-ready AI agents using customizable tools or access multiple LLMs through a single endpoint. Create custom knowledge bases or connect external data.
- Pangenome explorations☆13Apr 8, 2026Updated 6 months ago
- ☆16Feb 28, 2025Updated last year
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆29Oct 1, 2022Updated 4 years ago
- SNP-Assisted SV Calling and Phasing Using ONT☆25Jul 9, 2023Updated 3 years ago
- Alignment-free genotyper for SNPs and short indels, implemented in Python.☆58Mar 7, 2025Updated last year
- Scripts and files used in the generation of the COLO829 somatic SV truthset.☆15Apr 9, 2022Updated 4 years ago
- VEP Plugin to annotate high-impact five prime UTR variants☆30Aug 23, 2024Updated 2 years ago
- ☆12May 6, 2022Updated 4 years ago
- Rapid estimation of phylogenetic trees using sketching☆13Feb 18, 2025Updated last year
- Deploy open-source AI quickly and easily - Special Bonus Offer • AdRunpod Hub is built for open source. One-click deployment and autoscaling endpoints without provisioning your own infrastructure.
- Detect recombination hotspots using population genetic data.☆17Jun 10, 2020Updated 6 years ago
- Fast and Optimal Affine-Gap Sequence-to-Graph Alignment☆37Jul 15, 2026Updated 3 months ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆31Jul 13, 2021Updated 5 years ago
- A toolkit for exploring regions of variation in pangenomes☆15Jun 12, 2026Updated 4 months ago
- Parakit is a tool to analyze the RCCX module, which contain the CYP21A2 gene, using long sequencing reads.☆18Jun 29, 2026Updated 3 months ago
- KaryoScope: rapid, alignment-free sequence annotation for the pangenome era☆29Updated this week
- this is the script used to compare single-cell perturbation response prediction models.☆10Jun 12, 2026Updated 4 months ago
- Plot multiple sequence alignment (MSA)☆17Apr 21, 2026Updated 6 months ago
- ☆12Dec 17, 2025Updated 10 months ago
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting for WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Deploy in minutes on Cloudways by DigitalOcean.
- methylR: a single shiny solution from sequencer data to pathway analysis☆13Oct 30, 2024Updated last year
- ☆19Apr 20, 2025Updated last year
- Tools to gather evidence for structural variation via breakpoint detection.☆20Mar 27, 2026Updated 6 months ago
- R package BioPred☆11Jun 7, 2024Updated 2 years ago
- ☆49Jan 7, 2025Updated last year
- The Arcade Learning Environment (ALE) -- a platform for AI research.☆27Sep 12, 2026Updated last month
- Genome Assembly 102☆19Apr 23, 2025Updated last year
- Search for activating regulatory variants in the tumor genome☆15Apr 11, 2025Updated last year
- BoostDiff - Inference of differential networks from gene expression data☆14Jan 11, 2024Updated 2 years ago
- Deploy to Railway using AI coding agents - Free Credits Offer • AdUse Claude Code, Codex, OpenCode, and more. Autonomous software development now has the infrastructure to match with Railway.
- B-cell and T-cell Adaptive Immune Receptor Repertoire (AIRR) sequencing analysis pipeline using the Immcantation framework☆82Updated this week
- Quantifying the regulatory potential of genetic variants via a hybrid sequence-oriented model☆10Jan 17, 2025Updated last year
- Code for the TAURUS study☆13Oct 24, 2024Updated last year
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆87Oct 6, 2021Updated 5 years ago
- Model-based Dimensionality Reduction for Single-cell RNA-seq with Generalized Bilinear Models☆18Jul 29, 2025Updated last year
- RCK: Reconstruction of clone- and haplotype-specific Cancer Karyotypes☆19Apr 2, 2020Updated 6 years ago
- pangenome analyses for complete genomes of great apes (and gibbon)☆21Oct 12, 2024Updated 2 years ago