Alternatives and similar repositories for ig_simulator

Users that are interested in ig_simulator are comparing it to the libraries listed below

• briney / abtools
  Analysis of antibody NGS data
  ☆12Updated 3 years ago
• scharch / SONAR
  Software for Ontogenic aNalysis of Antibody Repertoires
  ☆19Updated last month
• hawkjo / freebarcodes
  FREE Divergence Error-Correcting DNA Barcodes
  ☆27Updated 7 months ago
• uio-bmi / compairr
  Comparison of Adaptive Immune Receptor Repertoires
  ☆27Updated 7 months ago
• JinsenLi / deepDNAshape
  A method to predict DNA shape features considering farther flanking region.
  ☆35Updated 11 months ago
• GfellerLab / MixMHCpred
  HLA-I ligand predictor
  ☆43Updated 8 months ago
• goodarzilab / SwitchFinder
  ☆18Updated last year
• matsengrp / vampire
  🧛 Deep generative models for TCR sequences 🧛
  ☆17Updated 3 years ago
• microsoft / BindVAE
  Variational Auto Encoders for learning binding signatures of transcription factors
  ☆12Updated last year
• GreiffLab / immuneSIM
  ☆38Updated last year
• mikessh / migmap
  HTS-compatible wrapper for IgBlast V-(D)-J mapping tool
  ☆52Updated 10 months ago
• labomics / MetaLogo
  MetaLogo: a heterogeneity-aware sequence logo generator and aligner
  ☆21Updated 2 years ago
• BioinformaticsToolsmith / MeShClust2
  MeShClust2: Application of alignment-free identity scores in clustering long DNA sequences
  ☆14Updated 3 years ago
• saketkc / pyseqlogo
  Python package to plot sequence logos
  ☆29Updated last year
• pjsample / human_5utr_modeling
  Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.
  ☆50Updated 6 years ago
• harmslab / gpmap
  A Python API for managing genotype-phenotype map data
  ☆12Updated 2 years ago
• uclahs-cds / package-moPepGen
  Multi-Omics Peptide Generator
  ☆25Updated last week
• TurtleTools / caretta
  A software-suite to perform multiple protein structure alignment and structure feature extraction.
  ☆30Updated 2 years ago
• psathyrella / partis
  B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction
  ☆59Updated last week
• NBISweden / IgDiscover-legacy
  Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads
  ☆16Updated last year
• GfellerLab / MixMHC2pred
  HLA-II ligand predictor.
  ☆44Updated 2 years ago
• Seeliglab / 2017---Deep-learning-yeast-UTRs
  Code from "Deep Learning Of The Regulatory Grammar Of Yeast 5′ Untranslated Regions From 500,000 Random Sequences"
  ☆15Updated 7 years ago
• brineylab / abstar
  VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.
  ☆42Updated last month
• lehner-lab / DMS2structure
  Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019
  ☆17Updated 6 years ago
• MasaakiU / MultiplexNanopore
  ☆15Updated 5 months ago
• CapraLab / cosmis
  COSMIS is a framework for quantifying the mutational constraint on amino acid sites in 3D spatial neighborhoods. The framework currently …
  ☆17Updated 2 years ago
• wuaipinglab / sitePath
  Phylogenetic pathway–dependent recognition of fixed substitutions and parallel mutations
  ☆11Updated 2 years ago
• GfellerLab / MoDec
  Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.
  ☆13Updated 6 months ago
• bcgsc / ntEmbd
  Deep learning embedding for nucleotide sequences
  ☆19Updated 5 months ago
• smolkelab / promoter_design
  Promoter activity measurement and modeling; artificial promoter design and testing
  ☆12Updated 2 years ago