yana-safonova / ig_simulator
IgSimulator is a versatile tool for simulation of immunoglobulin repertoire
☆11Updated 7 years ago
Related projects ⓘ
Alternatives and complementary repositories for ig_simulator
- Comparison of Adaptive Immune Receptor Repertoires☆25Updated last year
- Analysis of antibody NGS data☆12Updated 2 years ago
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆41Updated last week
- COSMIS is a framework for quantifying the mutational constraint on amino acid sites in 3D spatial neighborhoods. The framework currently …☆16Updated 2 years ago
- Software for Ontogenic aNalysis of Antibody Repertoires☆17Updated last year
- HTS-compatible wrapper for IgBlast V-(D)-J mapping tool☆52Updated 3 weeks ago
- 🧛 Deep generative models for TCR sequences 🧛☆16Updated 2 years ago
- ☆14Updated 4 months ago
- Evolutionary conservation estimation of residues or nucleotides☆33Updated 2 years ago
- FREE Divergence Error-Correcting DNA Barcodes☆25Updated 4 months ago
- Tool package to perform in-silico CRISPR analysis and assessment☆22Updated 6 months ago
- Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads☆17Updated 11 months ago
- A high-fidelity E. coli RNA-seq compendium☆32Updated 3 years ago
- Code and data used in The Great Repertoire Project☆29Updated 3 years ago
- ☆10Updated 2 months ago
- software for the analysis and visualization of deep mutational scanning data☆32Updated 2 years ago
- HLA-II ligand predictor.☆35Updated last year
- HLA-I ligand predictor☆29Updated 6 months ago
- A software-suite to perform multiple protein structure alignment and structure feature extraction.☆27Updated last year
- Tool for Motif Deconvolution in large HLA-II ligand datasets without the need of prior alignment.☆11Updated last year
- ☆13Updated last week
- iCodon customizes gene expression based on the codon composition☆13Updated last year
- Modeling of human 5′ UTRs enables the design of new sequences for target levels of translation and 5′ UTR variant prediction.☆43Updated 5 years ago
- Immunoglobulin and T-Cell receptor rearrangement software☆47Updated last year
- Scripts for "Determining protein structures using deep mutagenesis", Schmiedel & Lehner, Nature Genetics, 2019☆17Updated 5 years ago
- RNA structure probing and post-transcriptional modifications mapping high-throughput data analysis☆35Updated 3 weeks ago
- Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9…☆20Updated 7 months ago
- 📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential☆14Updated 2 weeks ago
- off-targeting assessment of Cas9 gRNAs☆12Updated 3 years ago
- ☆38Updated 11 months ago