Summary statistics for repertoires
☆18Feb 1, 2023Updated 3 years ago
Alternatives and similar repositories for sumrep
Users that are interested in sumrep are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Infer selection pressures on features of amino acid CDR3 sequences.☆25Apr 17, 2024Updated 2 years ago
- Code and data used in The Great Repertoire Project☆30Jun 14, 2021Updated 5 years ago
- Matching T-cell receptor repertoires to a database of antigen specificities☆39Oct 21, 2026Updated last week
- IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:☆55Jan 7, 2026Updated 9 months ago
- 📝 [Tutorial] RepSeq data mining basics in R☆10Mar 13, 2019Updated 7 years ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click. Zero configuration with optimized deployments.
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Oct 11, 2019Updated 7 years ago
- Clonotype Neighbor Graph Analysis☆100Jun 15, 2026Updated 4 months ago
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆45Sep 8, 2026Updated last month
- Analysis of antibody NGS data☆13Mar 19, 2026Updated 7 months ago
- Using BCR and expression for sequence embedding☆28Jun 12, 2026Updated 4 months ago
- ☆19Nov 18, 2025Updated 11 months ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆98Dec 4, 2020Updated 5 years ago
- Analysis of immune repertoire sequencing results☆147Updated this week
- A package code for fitting power law distributions using Bayesian or Maximum Likelihood approaches.☆12Aug 1, 2019Updated 7 years ago
- GPUs on demand by Runpod - Special Offer Available • AdRun AI, ML, and HPC workloads on powerful cloud GPUs—without limits or wasted spend. Deploy GPUs in under a minute and pay by the second.
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆124Sep 16, 2025Updated last year
- Fast, efficient tool for analysis of T cell receptor repertoires (OLD VERSION)☆11Jun 20, 2017Updated 9 years ago
- Predicting T Cell Receptor Specificity with Deep Learning☆10Jul 17, 2019Updated 7 years ago
- Quantifiable predictive features define epitope-specific T cell receptor repertoires☆13Dec 8, 2022Updated 3 years ago
- ☆17Jun 24, 2021Updated 5 years ago
- Immunoglobulin and T-Cell receptor rearrangement software☆52Jan 9, 2026Updated 9 months ago
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆243Feb 12, 2026Updated 8 months ago
- T cell Receptor and B cell Receptor assembly from single cell RNA sequencing data☆10Aug 27, 2017Updated 9 years ago
- Decombinator: fast, error-correcting analysis of TCR repertoires☆28May 18, 2026Updated 5 months ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- ☆15Jul 16, 2026Updated 3 months ago
- Primer Seek in RNA-Seq. Designs RT-PCR primers that validate alternative splicing events from RNA-Seq data.☆13Nov 27, 2016Updated 9 years ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆22Jan 15, 2023Updated 3 years ago
- ☆10Oct 22, 2018Updated 8 years ago
- convert a blast output to a bed file☆12Jun 19, 2015Updated 11 years ago
- NetTCR-2.0. Sequence-based prediction of peptide-TCR binding☆37Mar 29, 2022Updated 4 years ago
- Analysis code for the TAP-seq manuscript.☆13Jun 25, 2021Updated 5 years ago
- An interactive browser for the VDJdb database☆16Oct 18, 2026Updated last week
- ☆41Aug 18, 2020Updated 6 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Immune deconvolution of publicly available TCGA expression data☆11Jan 28, 2019Updated 7 years ago
- High-throughput mapping and domain partitioning of antigen receptor sequences☆56Updated this week
- Detecting TCR involved in immune responses from single RepSeq datasets☆28Jun 17, 2019Updated 7 years ago
- A collection of modules to process and analyze IMGT-HLA sequences.☆29Dec 18, 2022Updated 3 years ago
- 📝 [Paper/Tutorial] T-cell repertoire annotation and motif discovery☆14Sep 15, 2025Updated last year
- predicting peptide and TCR interaction☆19Jan 27, 2021Updated 5 years ago
- An UMI-tagged sequencing swiss-knife. Built for amplicon sequencing of immune repertoires, ctDNA and rare mutations, single-cell sequenci…☆45Updated this week