Summary statistics for repertoires
☆17Feb 1, 2023Updated 3 years ago
Alternatives and similar repositories for sumrep
Users that are interested in sumrep are comparing it to the libraries listed below
Sorting:
- Infer selection pressures on features of amino acid CDR3 sequences.☆25Apr 17, 2024Updated last year
- IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:☆52Jan 7, 2026Updated last month
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Oct 11, 2019Updated 6 years ago
- Code and data used in The Great Repertoire Project☆29Jun 14, 2021Updated 4 years ago
- Quantifiable predictive features define epitope-specific T cell receptor repertoires☆13Dec 8, 2022Updated 3 years ago
- Analysis of antibody NGS data☆13May 17, 2022Updated 3 years ago
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆44Feb 22, 2026Updated last week
- ☆18Nov 18, 2025Updated 3 months ago
- B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction☆62Feb 25, 2026Updated last week
- ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Feb 23, 2026Updated last week
- convert a blast output to a bed file☆12Jun 19, 2015Updated 10 years ago
- Analysis code for the TAP-seq manuscript.☆11Jun 25, 2021Updated 4 years ago
- ☆14Oct 16, 2025Updated 4 months ago
- 📝 [Tutorial] RepSeq data mining basics in R☆11Mar 13, 2019Updated 6 years ago
- HLA-I ligand predictor☆43Sep 24, 2025Updated 5 months ago
- Integrating influenza antigenic dynamics with molecular evolution☆12May 28, 2015Updated 10 years ago
- Immunoglobulin and T-Cell receptor rearrangement software☆50Jan 9, 2026Updated last month
- SMILE: Mutual Information Learning for Integration of Single Cell Omics Data☆11Mar 28, 2023Updated 2 years ago
- A package code for fitting power law distributions using Bayesian or Maximum Likelihood approaches.☆12Aug 1, 2019Updated 6 years ago
- Altered TCR Ligand Affinities and Structures☆12Dec 1, 2023Updated 2 years ago
- Interactive browser for the VDJdb database☆15Updated this week
- Published at Bioinformatics☆12Jul 4, 2024Updated last year
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆13Nov 12, 2019Updated 6 years ago
- T cell Receptor and B cell Receptor assembly from single cell RNA sequencing data☆10Aug 27, 2017Updated 8 years ago
- Software to process, statistically analyse and visualise deep mutational scanning data☆14Oct 29, 2025Updated 4 months ago
- Spatial direct messaging detected by bivariate Moran☆32Jul 16, 2025Updated 7 months ago
- HTS-compatible wrapper for IgBlast V-(D)-J mapping tool☆53Oct 29, 2024Updated last year
- HLA-II ligand predictor.☆46Apr 6, 2023Updated 2 years ago
- A collection of modules to process and analyze IMGT-HLA sequences.☆29Dec 18, 2022Updated 3 years ago
- This is the BWA workflow used in the PanCancer project used to allign all the BAM files.☆11Dec 27, 2022Updated 3 years ago
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Feb 1, 2020Updated 6 years ago
- Integrative analysis for scRNA-seq and scTCR-/scBCR-seq data☆20Updated this week
- Software for Ontogenic aNalysis of Antibody Repertoires☆19Sep 25, 2025Updated 5 months ago
- draw sequence logos tailored to deep mutational scanning (DMS) data☆12Feb 12, 2026Updated 2 weeks ago
- Nanopore Real-Time Analysis Tool☆17Sep 4, 2024Updated last year
- TCR Reconstruction Algorithm for Paired-End Single cell☆14Oct 13, 2019Updated 6 years ago
- GREAT algorithm in Python☆14Oct 24, 2022Updated 3 years ago
- Quality control for phylogenetic analyses☆13Feb 23, 2026Updated last week
- B-cell repertoire and clonal family tree explorer☆17Feb 11, 2026Updated 2 weeks ago