Summary statistics for repertoires
☆17Feb 1, 2023Updated 3 years ago
Alternatives and similar repositories for sumrep
Users that are interested in sumrep are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- Infer selection pressures on features of amino acid CDR3 sequences.☆25Apr 17, 2024Updated last year
- Code and data used in The Great Repertoire Project☆29Jun 14, 2021Updated 4 years ago
- IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:☆52Jan 7, 2026Updated 3 months ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆29Oct 11, 2019Updated 6 years ago
- VDJ assignment and antibody sequence annotation. Scalable from a single sequence to billions of sequences.☆44Mar 30, 2026Updated last week
- Managed hosting for WordPress and PHP on Cloudways • AdManaged hosting with the flexibility to host WordPress, Magento, Laravel, or PHP apps, on multiple cloud providers. Cloudways by DigitalOcean.
- Analysis of antibody NGS data☆13Mar 19, 2026Updated 3 weeks ago
- ☆18Nov 18, 2025Updated 4 months ago
- A package code for fitting power law distributions using Bayesian or Maximum Likelihood approaches.☆12Aug 1, 2019Updated 6 years ago
- Quantifiable predictive features define epitope-specific T cell receptor repertoires☆13Dec 8, 2022Updated 3 years ago
- T cell Receptor and B cell Receptor assembly from single cell RNA sequencing data☆10Aug 27, 2017Updated 8 years ago
- ☆14Oct 16, 2025Updated 5 months ago
- [Deprectated, use vdjmatch2 instead] ⚙️ Matching T-cell repertoire against a database of TCR antigen specificities☆39Feb 23, 2026Updated last month
- Analysis code for the TAP-seq manuscript.☆11Jun 25, 2021Updated 4 years ago
- convert a blast output to a bed file☆12Jun 19, 2015Updated 10 years ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- Integrative analysis for scRNA-seq and scTCR-/scBCR-seq data☆21Updated this week
- Clonotype Neighbor Graph Analysis☆95Feb 12, 2026Updated 2 months ago
- [Deprecated, see README] Post-analysis of immune repertoire sequencing data☆144Mar 26, 2026Updated 2 weeks ago
- Detecting TCR involved in immune responses from single RepSeq datasets☆27Jun 17, 2019Updated 6 years ago
- 📝 [Tutorial] RepSeq data mining basics in R☆11Mar 13, 2019Updated 7 years ago
- predicting peptide and TCR interaction☆20Jan 27, 2021Updated 5 years ago
- B- and T-cell receptor sequence annotation, simulation, clonal family and germline inference, and affinity prediction☆62Apr 4, 2026Updated last week
- A collection of modules to process and analyze IMGT-HLA sequences.☆29Dec 18, 2022Updated 3 years ago
- GREAT algorithm in Python☆14Oct 24, 2022Updated 3 years ago
- End-to-end encrypted cloud storage - Proton Drive • AdSpecial offer: 40% Off Yearly / 80% Off First Month. Protect your most important files, photos, and documents from prying eyes.
- Immunoglobulin and T-Cell receptor rearrangement software☆51Jan 9, 2026Updated 3 months ago
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆13Nov 12, 2019Updated 6 years ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆95Dec 4, 2020Updated 5 years ago
- Code for reproducing results from the paper "RNA velocity and protein acceleration from single-cell multiomics experiments."☆11Feb 1, 2020Updated 6 years ago
- 📚 Tools and databases for analyzing HLA and VDJ genes.☆237Feb 12, 2026Updated 2 months ago
- R-package for the analysis of single-cell TCR/BCR data in the Seurat ecosystem☆21Apr 14, 2025Updated 11 months ago
- Workflow for the Association of T-cell receptors from 3' single-cell RNA-seq (WAT3R)☆21Jan 15, 2023Updated 3 years ago
- Deep Learning Methods for Parsing T-Cell Receptor Sequencing (TCRSeq) Data☆122Sep 16, 2025Updated 6 months ago
- Decombinator v5: fast, error-correcting analysis of TCR repertoires☆27Mar 20, 2026Updated 3 weeks ago
- 1-Click AI Models by DigitalOcean Gradient • AdDeploy popular AI models on DigitalOcean Gradient GPU virtual machines with just a single click and start building anything your business needs.
- Quantifying the nativeness of antibody sequences using long short-term memory networks☆18Dec 17, 2021Updated 4 years ago
- HLA-I ligand predictor☆45Mar 19, 2026Updated 3 weeks ago
- a light structured Residual autoencoder and mutual nearest neighbor Paring guided Adversarial Network for scRNA-seq batch correction☆15Jul 13, 2023Updated 2 years ago
- Altered TCR Ligand Affinities and Structures☆12Dec 1, 2023Updated 2 years ago
- This is the BWA workflow used in the PanCancer project used to allign all the BAM files.☆11Dec 27, 2022Updated 3 years ago
- MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.☆385Apr 3, 2026Updated last week
- 📝 [Paper] TCRen: predicting TCR-peptide recognition based on residue-level pairwise statistical potential☆24Mar 6, 2026Updated last month