UVC, a very accurate small-variant caller (https://doi.org/10.1093/bib/bbab458)
☆14May 18, 2025Updated last year
Alternatives and similar repositories for uvc
Users that are interested in uvc are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- amplicon/smMIP mapping and analysis pipeline☆11Dec 8, 2022Updated 3 years ago
- dv-trio provides a pipeline to call variants for a trio (father-mother-child) using DeepVariants [1]. Genomic Variant Calling Files (gVCF…☆11Feb 3, 2021Updated 5 years ago
- Vim syntax highlighting for WDL☆20Jul 28, 2021Updated 5 years ago
- Repo that aids in the detection of microsatellite instabilities (MSI) from sequencing data☆21Apr 22, 2024Updated 2 years ago
- TNER: Tri-Nucleotide Error Reducer for ctDNA detection☆21Aug 23, 2019Updated 6 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Hidden Markov Model based Copy number caller☆20Jul 18, 2026Updated last month
- Multi-sample genome coverage viewer to observe large, coverage-based anomalies alongside annotations and sample metadata☆58Feb 17, 2022Updated 4 years ago
- ☆20Nov 30, 2023Updated 2 years ago
- ☆16Jan 15, 2025Updated last year
- Search for activating regulatory variants in the tumor genome☆15Apr 11, 2025Updated last year
- ProSolo, variant calling from single cell DNA-seq data, or: bulk backing vocals for single cell solos.☆21Sep 1, 2021Updated 4 years ago
- de Bruijn graph cOrrectiOn from graph aLignment☆11Jul 20, 2020Updated 6 years ago
- Flexible Integration of single-cell RNA-sequencing data for large-scale Multi-tissue cell atlas datasets☆13Sep 20, 2022Updated 3 years ago
- Pipeline for generating RNAseq-based cancer patient reports☆15Jul 31, 2026Updated 2 weeks ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- MSKCC Reis-Filho Lab pipeline thingy☆18Jun 9, 2026Updated 2 months ago
- ☆36Mar 16, 2021Updated 5 years ago
- High-intensity sequencing reveals the sources of plasma circulating cell-free DNA variants☆22Mar 27, 2020Updated 6 years ago
- The python binding for D4 format☆16Oct 22, 2021Updated 4 years ago
- Ultra-fast, high-performing structural variation (SV) detector☆24Apr 26, 2023Updated 3 years ago
- Whole genome workflows☆13Nov 9, 2024Updated last year
- Deduplication for cfDNA sequencing data☆11Jul 5, 2017Updated 9 years ago
- Microsatellite instability (MSI) detection for cfDNA samples.☆21Feb 20, 2021Updated 5 years ago
- Repository for RecallME-v.0.1 a variant calling pipelines benchmarker and optimizer☆13Dec 18, 2023Updated 2 years ago
- Deploy on Railway without the complexity - Free Credits Offer • AdConnect your repo and Railway handles the rest with instant previews. Quickly provision container image services, databases, and storage volumes.
- overlapping bases in read-pairs from a fragment indicate accuracy and reveal error-prone sites☆34Jun 6, 2025Updated last year
- Unfazed by genomic variant phasing☆28May 26, 2024Updated 2 years ago
- ☆10Nov 8, 2021Updated 4 years ago
- ☆18Jan 24, 2018Updated 8 years ago
- Updated figures for "A benchmarking of WGS-based structural variant callers" paper☆27Apr 3, 2022Updated 4 years ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆25May 30, 2023Updated 3 years ago
- Pipeline for the identification of cancer-related mutations from RNA-seq data☆14Aug 17, 2021Updated 5 years ago
- v2.x of the microassembly based somatic variant caller☆29Updated this week
- MEM mapper prototype☆13Nov 28, 2020Updated 5 years ago
- Wordpress hosting with auto-scaling - Free Trial Offer • AdFully Managed hosting for WordPress and WooCommerce businesses that need reliable, auto-scalable performance. Cloudways SafeUpdates now available.
- Viola is a flexible and powerful python package designed specifically for analysis of genomic structural variant (SV) signatures.☆28Jul 26, 2024Updated 2 years ago
- FermiKit small variant calls for public SGDP samples☆17Sep 22, 2016Updated 9 years ago
- PAnno is a Pharmacogenomics Annotation tool for clinical genomic testing.☆18Dec 28, 2022Updated 3 years ago
- Clinical Variant Annotation Pipeline☆10Apr 21, 2020Updated 6 years ago
- Detects human contamination in bam files☆16Sep 10, 2020Updated 5 years ago
- This repository contains the source code of the revised version of MutPanning. MutPanning is publicly available under the BSD3-Clause ope…☆14Nov 12, 2019Updated 6 years ago
- Read CRAM v3 and v2 in node or in the browser☆18Updated this week