NBISweden / IgDiscover-legacy
Analyze antibody repertoires and discover new V genes from high-throughput sequencing reads
☆17Updated 11 months ago
Related projects ⓘ
Alternatives and complementary repositories for IgDiscover-legacy
- Comparison of Adaptive Immune Receptor Repertoires☆25Updated last year
- Analysis of antibody NGS data☆12Updated 2 years ago
- ☆14Updated 2 weeks ago
- ☆14Updated 2 years ago
- R package to analyze aberrant splicing junctions in tumor samples to identify neoepitopes☆13Updated 2 weeks ago
- off-targeting assessment of Cas9 gRNAs☆12Updated 3 years ago
- Ultra-fast 5' and 3' demultiplexer☆24Updated 7 months ago
- predicts neoepitopes from phased somatic mutations detected using tumor/normal DNA-seq data☆26Updated last year
- FREE Divergence Error-Correcting DNA Barcodes☆8Updated 6 years ago
- Tool package to perform in-silico CRISPR analysis and assessment☆22Updated 6 months ago
- Software for Ontogenic aNalysis of Antibody Repertoires☆17Updated last year
- Modelling insertion efficiency for Prime Insertion Experiments☆13Updated 7 months ago
- A Computational Workflow for Designing Libraries of sgRNAs for CRISPR-Mediated Base Editing, and much more☆17Updated 5 months ago
- Comprehensive Human Expressed SequenceS☆16Updated 3 months ago
- ImReP is a computational method for rapid and accurate profiling of the adaptive immune repertoire from regular RNA-Seq data.☆28Updated 5 years ago
- Bioinformatic pipeline for identifying dsDNA breaks by marker based incorporation, such as breaks induced by designer nucleases like Cas9…☆20Updated 7 months ago
- ☆46Updated 2 years ago
- PRedictor of IMmunogenic Epitopes☆17Updated 6 months ago
- functions and algorithms for single cell RNA-seq analyses☆12Updated 3 years ago
- Millefy: Genome browser-like visualization of single-cell RNA-seq dataset☆27Updated 4 years ago
- A Nextflow pipeline to align, merge, and organize large PhIP-Seq datasets☆11Updated 2 weeks ago
- Saluki, a method to predict mRNA half-lives from sequence☆22Updated 2 years ago
- Pipeline to detect HLA disruption from WES and RNAseq data☆15Updated last month
- ☆14Updated 4 months ago
- Bayesian enrichment estimation in R☆10Updated 2 years ago
- The official repository for the deepSNV bioconductor packages. Branch master tracks the official Bioconductor development branch.☆14Updated 2 years ago
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆27Updated 3 years ago
- ChIP-seq DC and QC Pipeline☆34Updated 3 years ago
- A guide to running MaxQuant in Linux☆31Updated 4 years ago
- ☆13Updated last year