nf-core / viralintegrationLinks
Analysis pipeline for the identification of viral integration events in genomes using a chimeric read approach.
☆17Updated 6 months ago
Alternatives and similar repositories for viralintegration
Users that are interested in viralintegration are comparing it to the libraries listed below
Sorting:
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆63Updated 6 months ago
- SQUID detects both fusion-gene and non-fusion-gene structural variations from RNA-seq data☆42Updated 3 years ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆25Updated 2 years ago
- ☆17Updated 4 months ago
- UMCU Genetics Nextflow modules☆28Updated last year
- A better, faster way to count guides in CRISPR screens.☆34Updated 8 months ago
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆35Updated last year
- Chromatin ACcessibility and Transcriptomics Unifying Software☆17Updated last year
- Useful tools for working with Salmon output☆39Updated 5 years ago
- ☆28Updated 2 years ago
- NASQAR: A web-based platform for High-throughput sequencing data analysis and visualization☆32Updated 5 years ago
- A command line tool to compute mapping statistics from a BAM file☆25Updated 3 years ago
- Nascent Transcription Processing Pipeline☆20Updated 3 weeks ago
- k-mer similarity analysis pipeline☆23Updated 3 weeks ago
- pathway based data integration and visualization☆42Updated 8 months ago
- Method for Identifying Novel Transcripts and Isoforms using Equivalence classes, in cancer and rare disease.☆37Updated last year
- interactive plots for differential expression analysis☆34Updated 5 months ago
- A bioinformatics best-practice analysis pipeline for calling structural variants (SVs), copy number variants (CNVs) and repeat region exp…☆26Updated this week
- Pipeline for identifying viral integration and fusion mRNA reads from NGS data. Manuscript is currently in preparation.☆29Updated 4 years ago
- BED QC tool (in the making)☆17Updated 3 years ago
- Please consider using/contributing to https://github.com/nf-core/sarek☆41Updated 4 years ago
- RNA-seq data comprehensive data analysis toolbox☆19Updated 3 years ago
- Portable WDL workflows for IDseq production pipelines☆32Updated 3 years ago
- supplementary tables and files☆10Updated 2 years ago
- Structural Variation and fusion detection using targeted sequencing data from circulating cell free DNA☆29Updated last year
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Updated 5 months ago
- Comprehensive Human Expressed SequenceS☆18Updated 5 months ago
- Slinker offers a succinct and complementary method to visualise RNA-Seq data through superTranscripts.☆19Updated 3 years ago
- Prepare Sailfish and Salmon output for downstream analysis☆42Updated 6 years ago
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆26Updated last week