nf-core / viralintegration
Analysis pipeline for the identification of viral integration events in genomes using a chimeric read approach.
☆17Updated 8 months ago
Alternatives and similar repositories for viralintegration:
Users that are interested in viralintegration are comparing it to the libraries listed below
- rnasplice is a bioinformatics pipeline for RNA-seq alternative splicing analysis☆50Updated last month
- Nextflow DSL2 pipeline to generate a Genome Note, including assembly statistics, quality metrics, and Hi-C contact maps. This workflow is…☆24Updated last week
- k-mer similarity analysis pipeline☆20Updated last week
- A command line tool to compute mapping statistics from a BAM file☆23Updated 2 years ago
- Pipeline to produce consensus reads using unique molecular indexes/barcodes (UMIs)☆20Updated this week
- UMCU Genetics Nextflow modules☆27Updated 2 months ago
- Nanopore Real-Time Analysis Tool☆15Updated 4 months ago
- A pipeline to investigate horizontal gene transfer from NGS data☆24Updated last month
- Intersect multiple VCF files with haplotype awareness☆25Updated 3 years ago
- ☆15Updated last year
- simple bioinformatics command-line (t)ools (i) (w)ished (i) (h)ad.☆44Updated last year
- Accurate Typing of Human Leukocyte Antigen (HLA) by Oxford Nanopore Sequencing☆15Updated 7 years ago
- Annotating principal splice isoforms☆14Updated 3 months ago
- Whole Exome/Whole Genome Sequencing alignment pipeline☆28Updated 4 months ago
- Hybridization probe design for targeted genomic sequencing of diverse and hypervariable viral taxa☆22Updated last year
- A Nextflow pipeline to identify quality control issues with new sequencing data.☆28Updated last year
- RNA-seq data comprehensive data analysis toolbox☆19Updated 2 years ago
- Experimental plugin to integrate GPT like prompt into Nextflow☆15Updated 9 months ago
- A pipeline for preprocessing NGS data from Illumina, Nanopore and PacBio technologies☆31Updated 6 months ago
- Bioinformatic Analysis pipeLine for SomAtic Mutations In Cancer☆45Updated this week
- Differential gene expression analysis and pathway analysis of RNAseq data☆32Updated last month
- Fast FASTQ sample demultiplexing in Rust.☆58Updated last month
- crab go snap snap☆35Updated last month
- WDL workflows for variant calling and assembly using ONT☆30Updated 3 weeks ago
- A collection of modules and sub-workflows for Nextflow☆26Updated this week
- ⛰ covtobed | Convert the coverage track from a BAM file into a BED file☆43Updated 2 years ago
- 🧬 MSABrowser: dynamic and fast visualization of sequence alignments, variations, and annotations☆31Updated 7 months ago
- Converts 'MultiQC' Reports into Tidy Data Frames☆14Updated 9 months ago
- Adapters for trimming☆30Updated 5 years ago
- Analysis of Dual RNA-seq data - an experimental method for interrogating host-pathogen interactions through simultaneous RNA-seq.☆20Updated this week