Detecting TCR involved in immune responses from single RepSeq datasets
☆28Jun 17, 2019Updated 7 years ago
Alternatives and similar repositories for ALICE
Users that are interested in ALICE are comparing it to the libraries listed below. We may earn a commission when you buy through links labeled 'Ad' on this page.
Sorting:
- 📝 [Paper/Tutorial] T-cell repertoire annotation and motif discovery☆14Sep 15, 2025Updated 11 months ago
- R implementation of GLIPH (Grouping of Lymphocyte Interactions by Paratope Hotspots), an algorithm developed by Glanville et al to identi…☆29Oct 1, 2022Updated 3 years ago
- ☆15Jul 16, 2026Updated last month
- A pipeline for complete and accurate recovery of TCR repertoires from high throughput sequencing data.☆23Sep 10, 2023Updated 2 years ago
- AIRR Community Data Standards☆41Aug 11, 2026Updated 3 weeks ago
- Managed Kubernetes at scale on DigitalOcean • AdDigitalOcean Kubernetes includes the control plane, bandwidth allowance, container registry, automatic updates, and more for free.
- ☆49Jul 7, 2022Updated 4 years ago
- Software tools for the analysis of epitope-specific T cell receptor (TCR) repertoires (scroll down for the README)☆87Oct 6, 2021Updated 4 years ago
- TCRGP, a novel Gaussian process method that can predict if TCRs recognize certain epitopes. This method can utilize different CDR sequenc…☆30Jan 31, 2023Updated 3 years ago
- Grouping of Lymphocyte Interactions by Paratope Hotspots☆96Dec 4, 2020Updated 5 years ago
- Decombinator: fast, error-correcting analysis of TCR repertoires☆28May 18, 2026Updated 3 months ago
- ☆19Apr 20, 2025Updated last year
- IGoR is a C++ software designed to infer V(D)J recombination related processes from sequencing data. Find full documentation at:☆54Jan 7, 2026Updated 7 months ago
- Single-cell immune repertoire trajectory analysis in R☆12Aug 8, 2025Updated last year
- Infer selection pressures on features of amino acid CDR3 sequences.☆25Apr 17, 2024Updated 2 years ago
- Serverless GPU API endpoints on Runpod - Get Bonus Credits • AdSkip the infrastructure headaches. Auto-scaling, pay-as-you-go, no-ops approach lets you focus on innovating your application.
- imNet: a Sequence Network Construction Toolkit☆20Jul 7, 2020Updated 6 years ago
- Compute generation probabilities of CDR3 amino acid and nucleotide sequences☆69Nov 18, 2025Updated 9 months ago
- Python library for immune repertoire analysis☆17Aug 6, 2026Updated 3 weeks ago
- Fork of https://bitbucket.org/mcgranahanlab/lohhla☆18Feb 19, 2020Updated 6 years ago
- pygor3 repository☆10Nov 20, 2025Updated 9 months ago
- Summary statistics for repertoires☆17Feb 1, 2023Updated 3 years ago
- Quantifiable predictive features define epitope-specific T cell receptor repertoires☆13Dec 8, 2022Updated 3 years ago
- Reproducibility Repo for mvTCR paper☆14Apr 2, 2024Updated 2 years ago
- An interactive browser for the VDJdb database☆16Updated this week
- Open source password manager - Proton Pass • AdSecurely store, share, and autofill your credentials with Proton Pass, the end-to-end encrypted password manager trusted by millions.
- Predicting T Cell Receptor Specificity with Deep Learning☆10Jul 17, 2019Updated 7 years ago
- Epitope immunogenicity prediction through in silico TCR-peptide contact potential profiling.☆24Nov 17, 2023Updated 2 years ago
- ☆17Jun 24, 2021Updated 5 years ago
- A toolkit for single-cell immune profiling☆374Aug 14, 2026Updated 2 weeks ago
- A unified cross-attention model for predicting antigen binding specificity to both HLA and TCR molecules☆15May 29, 2026Updated 3 months ago
- IMGT segment library converted to RepSeq.IO JSON format☆14Mar 21, 2023Updated 3 years ago
- dandelion - A single cell BCR/TCR V(D)J-seq analysis package☆128Aug 19, 2026Updated last week
- TraCeR - reconstruction of T cell receptor sequences from single-cell RNAseq data☆136Nov 28, 2023Updated 2 years ago
- Git-based antigen specificity database storage & management.☆155Updated this week
- Virtual machines for every use case on DigitalOcean • AdGet dependable uptime with 99.99% SLA, simple security tools, and predictable monthly pricing with DigitalOcean's virtual machines, called Droplets.
- T cell Receptor and B cell Receptor assembly from single cell RNA sequencing data☆10Aug 27, 2017Updated 9 years ago
- Ultrafast method to compute single-sample gene set enrichment scores for gene expression or proteomics data☆24Aug 13, 2026Updated 2 weeks ago
- Bayesian inference of effective contagion models from population level data, with STAN☆15Nov 9, 2020Updated 5 years ago
- MiXCR is an ultimate software platform for analysis of Next-Generation Sequencing (NGS) data for immune profiling.☆399Jul 10, 2026Updated last month
- Comparison of Adaptive Immune Receptor Repertoires☆30Jan 29, 2025Updated last year
- An algorithm for error-correction of immunosequencing Illumina MiSeq reads and immunoproteogenomic analysis☆18Nov 1, 2018Updated 7 years ago
- [DEPRECATED, see https://immunarch.com/] tcR: an R package for immune receptor repertoire advanced data analysis.☆40Jun 8, 2020Updated 6 years ago